Anisotropic nuclear spin interactions for the morphology analysis of proteins in solution by NMR spectroscopy.

Determining the relative orientation of domains within a protein is an important problem in structural biology, which has been difficult to address by either X-ray crystallography or NMR. The structure of a multidomain protein in a crystal lattice can be altered by crystal packing forces, resulting in different domain arrangements from those in solution. On the other hand, conventional NMR primarily provides short-range structural information, including proton-proton distances derived from nuclear Overhauser effects (NOEs) and torsion angles through vicinal spin couplings. Thus, NMR cannot always determine the precise interdomain arrangements due to the sparsely observed spin interactions between domains. However, the weak alignment of proteins in solution has enabled a new NMR technique to determine the domain arrangement based on the different structural information, which defines the orientation of a structural unit in protein against the magnetic field. This technique relies on the anisotropic nuclear spin interactions that only occur for a molecule in a weakly aligned state. In this review, the basics of the new NMR approach are described with focusing on its application to domain orientation analysis. We also describe our recently established NMR approach using the same spin interactions, which expands the domain arrangement analysis to higher-molecular weight proteins over 100 kDa.     

Stereochemistry of Substitution of the α-Dimethylamino Group by Dialkylzinc in Chiral Benzylferrocene

The stereochemistry of the substitution of the α-dimethylamino group by dimethylzinc in the presence of acetyl chloride in the chiral benzylferrocene backbone was examined. The reaction with the benzylferrocene bearing an o-bromo substituent at both ferrocene and the phenyl ring proceeded with inversion of configuration, while the reaction with the benzylferrocene bearing an o-bromo substituent at either ferrocene or the phenyl ring proceeded with retention of configuration.     

Preparation of Glycogen‐Based Polysaccharide Materials by Phosphorylase‐Catalyzed Chain Elongation of Glycogen

Facile preparation of glycogen‐based polysaccharide gel materials was carried out by phosphorylase‐catalyzed chain elongation of glycogen using glucose 1‐phosphate (Glc‐1‐P). The resulting solution after the enzymatic reaction gradually turned into a hydrogel form, which was probably caused by formation of junction zones based on the double helix structure of the elongated amylose chains among the glycogen molecules. Furthermore, lyophilization of the hydrogel resulted in formation of a glycogen‐based xerogel. The mechanical properties of the hydrogels and xerogels were affected by the amount of glycogen and the Glc‐1‐P/glycogen ratio in the feed for the enzymatic reaction. The xerogel was also subjected to film formation and re‐hydrogelation with appropriate techniques.

     

A cold plasma dielectric barrier discharge atomic emission detector for atmospheric mercury

An automated atmospheric elemental mercury analyzer based on the dielectric barrier discharge (DBD) atomic emission technique was developed. The instrument is based on a gold-on tungsten coiled filament preconcentrator fashioned from commercial quartz-halogen lamps, a DBD excitation source and a radiation detector. An in-house program provided system control and data collection. Several types of radiation detectors, e.g., charge coupled device (CCD) array spectrometers, photomultiplier tubes (PMTs) and phototube (PT) are investigated. An argon plasma provided better performance than a nitrogen plasma. With ∼0.88 standard liters per min sampling rate and preconcentration for 2 min, the estimated (S/N = 3) detection limit was 0.12 ng/L (Hg⁰), the linear range extended at least to 6.6 ng Hg/L. Typical RSD values for determination at the single digit ng/L level ranged from 2.8 to 4.9%. In 19 separate calibrations conducted over 7 days, the calibration slope had a standard error of 1%. The system was applied to the determination of atmospheric mercury in two different locations.     

Silver/ThioClickFerrophos-Catalyzed Enantioselective Conjugate Addition and Cycloaddition of Glycine Imino Ester with Nitroalkenes

We applied the combination of AgOAc with ThioClickFerrophos, the chiral ferrocenyl triazole-based P,S-ligand, to the reaction of glycine imino ester with nitroalkenes. The conjugate addition of the imino methyl ester preferentially produced anti-α-imino-γ-nitrobutyrates in good yields with high enantioselectivities (ee) of up to 99% at -25 °C in THF in the presence of triethylamine. Meanwhile, the pyrrolidine cycloadducts were obtained as major products in good yields with high enantioselectivities (up to 96% ee) using tert-butyl imino ester in the absence of triethylamine at room temperature.     

Dynamical valence fluctuation at the charge-density-wave phase boundary in iodide-bridged Pt compound [Pt(chxn)2I]I2

We synthesized a novel iodo-bridged linear chain platinum compound, having the quasi-two-dimensional charge-density-wave (CDW) ground state and the smallest band gap. In this compound, we discovered an anomalous valence state in the boundary region at which the CDW phase alternates in the crystal by means of ESR, X-ray diffuse scattering, STM, and electrical resistivity. This anomalous state can be explained by the fast fluctuation between Pt(IV)-I...Pt(II) and Pt(II)...I-Pt(IV) in the double well potential. This is the first observation of the dynamical fluctuation of the CDW phase among the quasi one-dimensional halogen-bridged complexes.     

Anion recognition by a silanediol-based receptor

To explore the anion recognition ability of silanol hydroxy groups, a silanediol-based receptor 1 was prepared. Spectroscopic studies and X-ray crystallography revealed that the receptor exhibits the characteristic recognition of anions via two hydrogen bonds in chloroform.     

Syntheses, characterization, and catalytic ability in alkane oxygenation of chloro(dimethyl sulfoxide)ruthenium(II) complexes with tris(2-pyridylmethyl)amine and its derivatives

New ruthenium(II) complexes having a tetradentate ligand such as tris(2-pyridylmethyl)amine (TPA), tris[2-(5-methoxycarbonyl)pyridylmethyl]amine [5-(MeOCO)3-TPA], tris(2-quinolylmethyl)amine (TQA), or bis(2-pyridylmethyl)glycinate (BPG) have been prepared. The reaction of the ligand with [RuCl2(Me2SO)4] resulted in a mixture of trans and cis isomers of the chloro(dimethyl sulfoxide-kappaS)ruthenium(II) complexes containing a TPA or a BPG, whereas a trans(Cl,N(amino)) isomer was selectively obtained for 5-(MeOCO)3-TPA and TQA. The trans and cis isomers of the [RuCl(TPA)(Me2SO)]+ complex were easily separated by fractional recrystallization. The molecular structures of trans- and cis(Cl,N(amino))-[RuCl(TPA)(Me2SO)]+ complexes and the trans(Cl,N(amino))-[RuCl{5-(MeOCO)3-TPA}(Me2SO)]+ complex have been determined by X-ray structural analyses. The reaction of TPA with [RuCl2(PhCN)4] gave a single isomer of the chloro(benzonitrile)ruthenium(II) complex, whereas the bis(benzonitrile)ruthenium(II) complex was obtained with BPG. The cis(Cl,N(amino))-[RuCl(TPA)(Me2SO)]+ complex is thermodynamically much less stable than the trans isomer and isomerizes in dimethyl sulfoxide at 65-100 degrees C. Oxygenation of alkanes catalyzed by these ruthenium(II) complexes has been examined. The chloro(dimethyl sulfoxide-kappaS)ruthenium(II) complexes with TPA and its derivatives using m-chloroperbenzoic acid as a cooxidant showed high catalytic ability. Adamantane was efficiently and selectively oxidized to give 1-adamantanol up to 88%. The chloro(dimethyl sulfoxide-kappaS)ruthenium(II) complex with 5-(MeOCO)3-TPA was found to be the most active catalyst among the complexes examined.     

Synthesis,characterization, and thermal properties of ring‐opening metathesis polynorbornenes and their hydrogenated derivatives bearing various ester and cyano groups

Doubly functionalized polar norbornenes 3a – 3g substituted by both a variety of ester and cyano groups were polymerized by ring‐opening metathesis polymerization (ROMP) with a Ru carbene complex 2 bearing 3‐bromopyridine as a ligand (third generation Grubbs' catalyst) in a living manner. The successive hydrogenation of the main‐chain double bond in the synthesized living ROMP polymers 4a – 4g with a hydridoruthenium complex was exploited. The comparison of thermal properties of a series of ring‐opening metathesis polymers 4a – 4g with those of their hydrogenated derivatives 5a – 5g revealed the decrease of glass transition temperatures (T_g) but little change of the 5% decomposition temperature (T_d⁵). In all cases examined in this study, a decrease of T_g by hydrogenation was around 20–40 °C, regardless of the ester substitutents. In the presence of the additional PCy₃, triethylamine, and methanol after complete consumption of monomer 3a under the living ROMP condition, the tandem ROMP‐hydrogenation of the resulting polymer 4a generated in situ was attained under a H₂ (9.8 MPa) atmosphere at 80 °C to afford the hydrogenated polymer 5a , retaining the narrow polydispersity of 1.03. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 3314–3325 2008     

Feedback control of instability waves in a transitional flat-plate boundary layer

A semi-automatic and active control of T-S waves and oblique waves in a transitional flat plate boundary layer is carried out in a wind-tunnel experiment and a numerical simulation. An array of piezo-ceramic actuators attached on a surface is used to generate counter waves that cancel the incoming instability waves. The actuator’s operating amplitudes and phases are successively updated using the velocity fluctuations monitored downstream by a rake of hotwires. Experimental results show that the system is effective in weakening these waves when their inclination angles are less than 15 degrees. However, the system encountered difficulty in controlling the waves of large inclination angles. In the numerical simulation, it is shown that the control can be accomplished much easier. The numerical results show that controllability of the large inclination angle waves can be improved by shortening the spanwise length each actuator piece. The danger of pursuing this kind of research solely by a numerical simulation is pointed out.