Characterization of N-terminal processing of group VIA phospholipase A<Subscript>2</Subscript> and of potential cleavage sites of amyloid precursor protein constructs by automated identification of signature peptides in LC/MS/MS analyses of proteolytic digests

Dysregulation of proteolytic processing of the amyloid precursor protein (APP) contributes to the pathogenesis of Alzheimer's Disease, and the Group VIA phospholipase A(2) (iPLA(2)beta) is the dominant PLA(2) enzyme in the central nervous system and is subject to regulatory proteolytic processing. We have identified novel N-terminal variants of iPLA(2)beta and previously unrecognized proteolysis sites in APP constructs with a C-terminal 6-myc tag by automated identification of signature peptides in LC/MS/MS analyses of proteolytic digests. We have developed a Signature-Discovery (SD) program to characterize protein isoforms by identifying signature peptides that arise from proteolytic processing in vivo. This program analyzes MS/MS data from LC analyses of proteolytic digests of protein mixtures that can include incompletely resolved components in biological samples. This reduces requirements for purification and thereby minimizes artifactual modifications during sample processing. A new algorithm to generate the theoretical signature peptide set and to calculate similarity scores between predicted and observed mass spectra has been tested and optimized with model proteins. The program has been applied to the identification of variants of proteins of biological interest, including APP cleavage products and iPLA(2)beta, and such applications demonstrate the utility of this approach.     

Systematic studies of fission fragment kinetic energy distributions by Langevin simulations

Fission fluctuation-dissipation dynamics of heavy nuclei has been studied using Langevin Monte Carlo simulations. The covariant form of the fission transport equation and the coefficients related to it are investigated. To learn about the influence of the dynamics from the ground state to the saddle point on the kinetic energy distributions we have studied various systems and compared the calculations both starting from the ground state and from the saddle point. Both the mean total kinetic energy of the fission fragments and its variances can fit with the experimental values in terms of a finite neck radius as scission condition.This work was supported by the National Natural Science Foundation of China.     

Comparison of the structures of an atomic three-valence-electron system with a nuclear three-valence-neutron system

A comparison has been made between the states of a 3-valence-electron system and a 3-valence-neutron system. The fermions are supposed to move in a sphere. The structures and internal motions of the head-states (the lowest of a given^2S+1 L ) of these systems havingL=0,S=1/2 and 3/2, and even and odd parity have been investigated. We have found that the symmetry governing the particular quantum system plays an essential role. In particular, all the nodal surfaces in the head-states originate from symmetry but not from dynamics. Consequently, the head-states of different dynamic systems have similar structures and similar internal motions.