Quantitative in vitro kinase reaction as a guide for phosphoprotein analysis by mass spectrometry

A simple calculation using the radioactive decay of (32)P incorporated into a protein during in vitro kinase reactions is described that allows the overall stoichiometry of phosphorylation for the substrate protein or peptide to be calculated. Prior to using techniques such as diagnostic ion scanning to identify the molecular weight of an unknown phosphopeptide in a complex mixture followed by tandem mass spectrometry (MS/MS) to locate the phosphorylated residue within the phosphopeptide, such calculations are predictive of the chances for successful characterization by these methods. An example of estimating the stoichiometry of peptide phosphorylation will be presented along with calculations that predict when adequate phosphopeptide is present in any given spot on the thin-layer chromatography (TLC) plates used for two-dimensional phosphopeptide (2DPP) mapping to allow extraction and complete characterization by MS/MS.     

Open-access liquid chromatography/mass spectrometry in a drug discovery environment

The use of open-access mass spectrometry to monitor synthetic chemistry reactions, and also the integrity and purity of new chemical entities, has been a part of the medicinal chemist's tool-box for more than 5 years. Originally in our group at Wyeth Research there were two open-access methods available to the chemists, flow injection analysis (FIA) and liquid chromatography/mass spectrometry (LC/MS). The FIA method was approximately 3 min long, while the LC/MS method was approximately 20 min long (including an 8 min gradient). Within the first 2 years, the total number of open-access analyses increased by approximately 125%. It is interesting, however, that the number of LC/MS analyses increased by more than 285%. This is attributed to the fact that the chemists began using the LC/MS data to monitor reactions and also to check final product integrity and purity. In addition, the number of chemists performing parallel synthesis reactions has increased; thus, individual chemists can produce sample sets of up to 100 vials. This paper describes the implementation of new methodology, which accommodates the need for much faster run times and also the ability to acquire alternating positive and negative ion spectra within the same run. In addition, the instrument has been configured to e-mail the resulting processed data report to the submitting chemist. Several methods have been developed, including structure elucidation using in-source collision-induced dissociation (CID) and night-time analysis. The LC/MS methods for this system are described herein and are applicable to both industrial and academic synthetic chemistry optimization efforts.     

Channel activity of a viral transmembrane peptide in micro-BLMs: Vpu(1-32) from HIV-1

We report for the first time on pore-suspending lipid bilayers, which we call micro-black lipid membranes (micro-BLMs), based on a highly ordered macroporous silicon array. Micro-BLMs were established by first functionalizing the backside porous silicon surface with gold and then chemisorbing 1,2-dipalmitoyl-sn-glycero-3-phosphothioethanol followed by spreading 1,2-diphytanoyl-sn-glycero-3-phosphocholine dissolved in n-decane. Impedance spectroscopy revealed the formation of single lipid bilayers confirmed by a mean specific capacitance of 0.6 +/- 0.2 microF/cm2. Membrane resistances were in the G omega-regime and beyond. The potential of the system for single channel recordings was demonstrated by inserting the transmembrane domain of the HIV-1 accessory peptide Vpu(1-32), which forms helix bundles with characteristic opening states. We elucidated different amilorides as potential drugs to inhibit channel activity of Vpu.     

Metallation studies of organofunctional trisiloxanes

Summary The organofunctional trisiloxanes Me₃SiOSiMe(R)OSiMe₃ [R=(CH₂)₂PPh₂, (CH₂)₃C₅H₄N, (CH₂)₃CN, (CH₂)₂Ph, (CH₂)₂SPh, CH=CH₂ and CH₂CH=CH₂] have been reacted with metal halide and-carbonyl moieties in order to determine the coordination preferences of materials being used as models for metallated longchain linear functionalised polysiloxanes. The products [Me₃SiOSiMe(R)OSiMe₃]₃ML_n [R=(CH₂)₂PPh₂, ML_n=RhCl],cis-[Me₃SiOSiMe(R)OSiMe₃]₂ML_n [R=(CH₂)₂PPh₂ or (CH₂)₃C₅H₄N, ML_n=Mo(CO)₄],trans-[Me₃SiOSiMe(R)OSiMe₃]₂ML_n[R=(CH₂)₂PPh₂, ML_n=NiCl₂, PdCl₂, PtCl₂ and [Rh(CO)Cl] and [Me₃SiOSiMe(R)OSiMe₃]ML_n [R=(CH₂)₂PPh₂, ML_n=Mo(CO)₃(2,2-bipyridine); R=(CH₂)₂Ph, ML_n=Mo(CO)₃; R=(CH₂)₃C₅H₄N, (CH₂)₃CN, or (CH₂)₂SPh, ML_n=Rh(CO)₂Cl; R=CH=CH₂ or CH₂CH=CH₂, ML_n=Fe(CO)₄] have been isolated and characterised spectroscopically in the course of these studies.     

Reissert compound studies. XXXI. Emetine analogs based on the reaction of the reissert anion with 1,3,4,6,7,11b-hexahydro-9, 10-dimethoxybenzo[a] quinolizin-2-ones

Reaction of the Reissert anion with the carbonyl group of 1,3,4,6,7,11b-hexahydro-9,10-dimethoxybenzo[a]quinolizin-2-one and with 3-ethyl-1,2,3,4,6,7-hexahydro-9,10-dimethoxy-11bH-benzo[a]quinolizin-2-carboxaldehyde give emetine analogs. This anion does not react with the carbonyl group of 3-aIkyl-1,3,4,6,7,11b-hexahydro-9,10-dimethoxybenzo[a]quinolizin-2-one but instead gives a rearrangement product and the benzoquinolizinone cyanohydrin.     

Fe(II) in different macrocycles: electronic structures and properties

A theoretical comparative study of complexes of porphyrin (P), porphyrazine (Pz), phthalocyanine (Pc), porphycene (Pn), dibenzoporphycene (DBPn), and hemiporphyrazine (HPz) with iron (Fe) has been carried out using a density functional theory (DFT) method. The difference in the core size and shape of the macrocycle has a substantial effect on the electronic structure and properties of the overall system. The ground states of FeP and FePc were identified to be the 3A2g [(d(xy))2(d(z)2)2(d(pi))2] state, followed by 3E(g) [(d(xy))2(d(z)2)1(d(pi))3]. For FePz, however, the 3E(g)-3A2g energy gap of 0.02 eV may be too small to distinguish between the ground and excited states. When the symmetry of the macrocycle is reduced from D4h to D2h, the degeneracy of the d(pi) (d(xz), d(yz)) orbitals is removed, and the ground state becomes 3B2g [(d(xy))2(d(z)2)1(d(yz))2(d(xz))1] or 3B3g [...(d(yz))1(d(xz))2] for FePn, FeDBPn, and FeHPz. The calculations also show how the change of the macrocycle can influence the axial ligand coordination of pyridine (Py) and CO to the Fe(II) complexes. Finally, the electronic structures of the mono- and dipositive and -negative ions for all the unligated and ligated iron macrocycles were elucidated, which is important for understanding the redox properties of these compounds. The differences in the observed electrochemical (oxidation and reduction) properties between metal porphycenes (MPn) and metal porphyrins (MP) can be accounted for by the calculated results (orbital energy level diagrams, ionization potentials, and electron affinities).     

A reanalysis of branching fractions of charmed mesonsD 0,D + andD s +

We combine highly complementary information on branching fractions of charmed mesonsD ⁰,D ⁺ andD _s ⁺ coming from two experiments both yielding doublecharm samples. The NA 32 experiment provided exclusive branching fractions for channels with at least two charged decay products while a recent Mark III paper provides results on inclusive charm decay properties. The knowledge of channels withK ⁰'s in the former is used to recalculate the charged multiplicity distribution in the latter. We obtain 〈n _ch〉=2.25±0.08 forD ⁰, 〈n _ch〉=1.96±0.08 forD ⁺ and 〈n _ch〉=2.41±0.38 forD _s ⁺ . In turn the knowledge of the charged multiplicity improves the overall normalization of exclusive branching fractions. This reanalysis yields model-independent results for charmed mesons. In particular we obtain branching fractions for 16D _s ⁺ decay channels including $$BF(D_s^ + \to \phi \pi ^ + ) = \left( {4.4\begin{array}{*{20}c} { + 2.3} \\ { - 1.8} \\ \end{array} } \right)\% .$$ .     

Production properties ofD 0,D +,D *+ andD s + in 230 GeV/cπ − andK −-Cu interactions

We have studied the hadronic production of charmed mesons in the NA 32 experiment at CERN. A special trigger together with a high resolution vertex detector consisting of charge coupled devices and silicon microstrip detectors allowed the selection of very clean samples of charmed mesons. We have collected 852 fully reconstructed decays: 60D _s ⁺ →K ⁺ K ^?π⁺, 543D°→K ^?π⁺ andK ^?π⁺π^?π⁺ as well as 249D ⁺→K ^?π⁺π⁺ (or charge conjugate). 147 mesons out of our \({{D^0 } \mathord{\left/ {\vphantom {{D^0 } {\bar D^0 }}} \right. \kern-0em} {\bar D^0 }}\) sample were produced via chargedD ^* state. For all charmed mesons we determine the total production cross-section and study thex _F andp _t ² distributions.     

Close-packed C(70)(3-) phases - synthesis, structure, and electronic properties

The high symmetry and resulting electronic degeneracy of the C(60)(3)(-) anion is viewed as the key molecular feature in the high superconducting transition temperatures of fulleride and oxidized fullerene systems. The experimental evaluation of this hypothesis requires the synthesis of face-centered cubic (fcc) trivalent fulleride anion salts derived from higher fullerenes such as C(70), which have thus far proved elusive with only stable A(1)C(70), A(4)C(70), and A(6)C(70) phases known. In this paper, we report the synthesis of fcc A(3)C(70) phases stabilized by size-matching the tetrahedral site with the sodium cation. The structures are strongly dependent on the cooling protocol due to the existence of metastable partially or completely orientationally disordered phases. EPR data indicate that the phases are metallic but not superconducting. The densities of states at the Fermi level appear too low to give superconductivity at above 5 K, consistent with recent observations that four electrons per C(70) anion are required for superconductivity. Size-matching on both the octahedral and tetrahedral sites is required for A(3)C(70) stability - K(2)CsC(70) is only stable at elevated temperature and Na(2)C(70) is unstable, the composition corresponding to C(70) and a sodium-rich trigonal phase.