Comparison of fingerprint-based methods for virtual screening using multiple bioactive reference structures

Fingerprint-based similarity searching is widely used for virtual screening when only a single bioactive reference structure is available. This paper reviews three distinct ways of carrying out such searches when multiple bioactive reference structures are available: merging the individual fingerprints into a single combined fingerprint; applying data fusion to the similarity rankings resulting from individual similarity searches; and approximations to substructural analysis. Extended searches on the MDL Drug Data Report database suggest that fusing similarity scores is the most effective general approach, with the best individual results coming from the binary kernel discrimination technique.     

New spectrophotometric method for the determination of trace amounts of palladium

Summary A simple, rapid, selective, and sensitive method for the spectrophotometric determination of palladium is developed based on the reaction of Pd(II) with 1-amino-4-hydroxyanthraquinone (AMHA). The reaction is carried out atpH 3.8 in 50% (v/v) ethanol-water medium. The molar absorptivity of the complexed ligand is 1.1 · 10⁴ l mol^–1 cm^–1 at 620 nm. Calibration plots are linear up to 17 µg Pd cm^–3. The optimum concentration range (Ringbom plot) is between 3–14.5 µg cm^–3. The spectral study of the reaction in solutions containing equimolar concentrations or an excess of one component, in thepH range 0.3–6.5, indicate the possible complex transitions that occur in solution. Complete graphical and logarithmic analysis of the absorbance-pH graphs was performed to demonstrate and characterize the complexation equilibria in solution. Under the optimum conditions, palladium can be determined as the noncharged complex Pd(AMHA)₂ in the presence of a large number of foreign ions. Interferences caused by zirconium(IV) could be masked with fluoride ions.

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Eine neue spektrophotometrische Methode für die Bestimmung von Palladium in Spuren

Zusammenfassung Eine einfache, schnelle und empfindliche Methode für die spektrophotometrische Bestimmung von Palladium wurde auf der Basis der Reaktion von Pd(II) mit 1-Amino-4-hydroxyanthrachinon (AMHA) entwickelt. Die Reaktion wird in 50% (v/v) Ethanol/Wasser beipH 3.8 ausgeführt. Die molare Absorption des komplexierten Liganden beträgt 1.1 · 10⁴ l mol^–1 cm^–1 bei 620 nm. Kalibrierungskurven verlaufen bis zu 17 µg Pd cm^–3 linear. Der optimale Konzentrationsbereich (Ringbom-Plot) liegt zwischen 3 und 14.5 µg cm^–3. Spektroskopische Untersuchungen der Reaktion in Lösungen, entweder mit equimolaren Konzentrationen oder mit einem Überschuß an einer Komponente impH-Bereich 0.3–6.5, lassen Rückschlüsse auf mögliche Komplex-Übergänge in Lösung zu. Es wurde eine vollständige graphische, logarithmische Analyse der Absorptions-pH-Graphen durchgeführt, um die Komplexgleichgewichte in Lösung aufzuklären und zu charakterisieren. Unter den Optimalbedingungen kann Palladium als nichtgeladener Komplex Pd(AMHA)₂ in Gegenwart einer großen Anzahl an Fremd-Ionen bestimmt werden. Schwierigkeiten mit Zirkonium(IV) konnte durch Maskierung mit Fluorid-Ionen umgangen werden.

     

OnD→ππ andK\bar K decays

We have analysed the recent data onD→ππ and \(K\bar K\) decays from ARGUS, CLEO and E691. (i) We find that Bauer, Stech and Wirbel (BSW) model does fairly well in explaining all data if we assume that final state interactions simply rotate the amplitudes in the complex plane. However, to get a good fit one needs to raiseD→K transition amplitudes by (5–10)% over the BSW values and lowerD→π amplitudes by a similar amount. (ii) We show that all the data can also be understood in a coupled channel inelastic model. (iii) We also find that the Isgur, Scora, Grinstein and Wise (ISGW) model-form factors, if extrapolated to small momentum transfers (t) by a single pole formula, yield branching ratios too small in comparison to data. We propose an alternate scheme to interpolate between BSW form factors att=0 and ISGW form factors att=t _max.     

Model for γγ→VV reactions near threshold

We propose a Veneziano-like model for VV reactions near threshold involving exchanges of 0^– trajectories int- andu-channels. The model is applied to , , , and processes. The model in its simplest form cannot account for the disparities in the cross sections for andK ^*+ K ^*– and for ⁰⁰ and ^+–. Further refinements of the model are suggested.     

Determination of the pesticide Chlorpyrifos by cathodic adsorptive stripping voltammetry

The adsorption behavior and differential pulse cathodic adsorptive stripping voltammetry of the pesticide Chlorpyrifos (CP) were investigated at the hanging mercury drop electrode (HMDE). The pesticide was accumulated at the HMDE and a well-defined stripping peak was obtained at –1.2 V vs Ag/AgCl electrode at pH 7.50. A voltammetric procedure was developed for the trace determination of Chlorpyrifos using differential pulse cathodic adsorptive stripping voltammetry (DP-CASV). The optimum working conditions for the determination of the compound were established. The peak current was linear over the concentration range 9.90 × 10^–8– 5.96 × 10^–7 mol/L of Chlorpyrifos. The influence of diverse ions and some other pesticides was investigated. The analysis of Chlorpyrifos in commercial formulations and treated waste water was carried out satisfactorily Received: 10 July 1997 / Revised: 1 April 1998 / Accepted: 6 April 1998     

Mixed-metal supramolecular complexes coupling phosphine-containing Ru(II) light absorbers to a reactive Pt(II) through polyazine bridging ligands

Supramolecular bimetallic Ru(II)/Pt(II) complexes [(tpy)Ru(PEt(2)Ph)(BL)PtCl(2)](2+) and their synthons [(tpy)Ru(L)(BL)](n)()(+) (where L = Cl(-), CH(3)CN, or PEt(2)Ph; tpy = 2,2':6',2'-terpyridine; and BL = 2,2'-bipyrimidine (bpm) or 2,3-bis(2-pyridyl)pyrazine (dpp)) have been synthesized and studied by cyclic voltammetry, electronic absorption spectroscopy, mass spectral analysis, and (31)P NMR. The mixed-metal bimetallic complexes couple phosphine-containing Ru chromophores to a reactive Pt site. These complexes show how substitution of the monodentate ligand on the [(tpy)RuCl(BL)](+) synthons can tune the properties of these light absorbers (LA) and incorporate a (31)P NMR tag by addition of the PEt(2)Ph ligand. The redox potentials for the Ru(III/II) couples occur at values greater than 1.00 V versus the Ag/AgCl reference electrode and can be tuned to more positive potentials on going from Cl(-) to CH(3)CN or PEt(2)Ph (E(1/2) = 1.01, 1.55, and 1.56 V, respectively, for BL = bpm). The BL(0/-) couple at -1.03 (bpm) and -1.05 V (dpp) for [(tpy)Ru(PEt(2)Ph)(BL)](2+) shifts dramatically to more positive potentials upon the addition of the PtCl(2) moiety to -0.34 (bpm) and -0.50 V (dpp) for the [(tpy)Ru(PEt(2)Ph)(BL)PtCl(2)](2+) bridged complex. The lowest energy electronic absorption for these complexes is assigned as the Ru(d pi) --> BL(pi*) metal-to-ligand charge transfer (MLCT) transition. These MLCT transitions are tuned to higher energy in the monometallic synthons when Cl(-) is replaced by CH(3)CN or PEt(2)Ph (516, 452, and 450 nm, for BL = bpm, respectively) and to lower energy when Pt(II)Cl(2) is coordinated to the bridging ligand (560 and 506 nm for BL = bpm or dpp). This MLCT state displays a broad emission at room temperature for all the dpp systems with the [(tpy)Ru(PEt(2)Ph)(dpp)PtCl(2)](2+) system exhibiting an emission centered at 750 nm with a lifetime of 56 ns. These supramolecular complexes [(tpy)Ru(PEt(2)Ph)(BL)PtCl(2)](2+) represent the covalent linkage of TAG-LA-BL-RM assembly (TAG = NMR active tag, RM = Pt(II) reactive metal).     

Catalysts for Suzuki-Miyaura coupling processes: scope and studies of the effect of ligand structure

Suzuki-Miyaura coupling reactions of aryl and heteroaryl halides with aryl-, heteroaryl- and vinylboronic acids proceed in very good to excellent yield with the use of 2-(2',6'-dimethoxybiphenyl)dicyclohexylphosphine, SPhos (1). This ligand confers unprecedented activity for these processes, allowing reactions to be performed at low catalyst levels, to prepare extremely hindered biaryls and to be carried out, in general, for reactions of aryl chlorides at room temperature. Additionally, structural studies of various 1.Pd complexes are presented along with computational data that help elucidate the efficacy that 1 imparts on Suzuki-Miyaura coupling processes. Moreover, a comparison of the reactions with 1 and with 2-(2',4',6'-triisopropylbiphenyl)diphenylphosphine (2) is presented that is informative in determining the relative importance of ligand bulk and electron-donating ability in the high activity of catalysts derived from ligands of this type. Further, when the aryl bromide becomes too hindered, an interesting C-H bond functionalization-cross-coupling sequence intervenes to provide product in high yield.