Analysis of the Antimicrobial and Anti-Biofilm Activity of Natural Compounds and Their Analogues against Staphylococcus aureus Isolates

(1) Background: Staphylococcus aureus (S. aureus) is one of the most frequent causes of biofilm-associated infections. With the emergence of antibiotic-resistant, especially methicillin-resistant S. aureus (MRSA), there is an urgent need to discover novel inhibitory compounds against this clinically important pathogen. In this study, we evaluated the antimicrobial and anti-biofilm activity of 11 compounds, including phenyl propenes and phenolic aldehydes, eugenol, ferulic acid, sinapic acid, salicylaldehyde, vanillin, cinnamoyl acid, and aldehydes, against drug-resistant S. aureus isolates. (2) Methods: Thirty-two clinical S. aureus isolates were obtained from Alkhidmat Diagnostic Center and Blood Bank, Karachi, Pakistan, and screened for biofilm-forming potential, and susceptibility/resistance against ciprofloxacin, chloramphenicol, ampicillin, amikacin, cephalothin, clindamycin, streptomycin, and gentamicin using the Kirby-Bauer disk diffusion method. Subsequently, 5 representative clinical isolates were selected and used to test the antimicrobial and anti-biofilm potential of 11 compounds using both qualitative and quantitative assays, followed by qPCR analysis to examine the differences in the expression levels of biofilm-forming genes (ica-A, fnb-B, clf-A and cna) in treated (with natural compounds and their derivatives) and untreated isolates. (3) Results: All isolates were found to be multi-drug resistant and dominant biofilm formers. The individual Minimum Inhibitory Concentration (MIC) of natural compounds and their analogues ranged from 0.75–160 mg/mL. Furthermore, the compounds, Salicylaldehyde (SALI), Vanillin (VAN), α-methyl-trans-cinnamaldehyde (A-MT), and trans-4-nitrocinnamic acid (T4N) exhibited significant (15–92%) biofilm inhibition/reduction percentage capacity at the concentration of 1–10 mg/mL. Gene expression analysis showed that salicylaldehyde, α-methyl-trans-cinnamaldehyde, and α-bromo-trans-cinnamaldehyde resulted in a significant (p < 0.05) downregulation of the expression of ica-A, clf-A, and fnb-A genes compared to the untreated resistant isolate. (4) Conclusions: The natural compounds and their analogues used in this study exhibited significant antimicrobial and anti-biofilm activity against S. aureus. Biofilms persist as the main concern in clinical settings. These compounds may serve as potential candidate drug molecules against biofilm forming S. aureus.     

Laboratory Investigation of LNAPL Migration in Double-Porosity Soil Under Fractured Condition Using Digital Image Analysis

Gas production from shale gas reservoirs plays a significant role in satisfying increasing energy demands. Compared with conventional sandstone and carbonate reservoirs, shale gas reservoirs are characterized by extremely low porosity, ultra-low permeability and high clay content. Slip flow, diffusion, adsorption and desorption are the primary gas transport processes in shale matrix, while Darcy flow is restricted to fractures. Understanding methane diffusion and adsorption, and gas flow and equilibrium in the low-permeability matrix of shale is crucial for shale formation evaluation and for predicting gas production. Modeling of diffusion in low-permeability shale rocks requires use of the Dusty gas model (DGM) rather than Fick’s law. The DGM is incorporated in the TOUGH2 module EOS7C-ECBM, a modified version of EOS7C that simulates multicomponent gas mixture transport in porous media. Also included in EOS7C-ECBM is the extended Langmuir model for adsorption and desorption of gases. In this study, a column shale model was constructed to simulate methane diffusion and adsorption through shale rocks. The process of binary \(\hbox {CH}_{4}{-}\hbox {N}_{2}\) diffusion and adsorption was analyzed. A sensitivity study was performed to investigate the effects of pressure, temperature and permeability on diffusion and adsorption in shale rocks. The results show that methane gas diffusion and adsorption in shale is a slow process of dynamic equilibrium, which can be illustrated by the slope of a curve in \(\hbox {CH}_{4}\) mass variation. The amount of adsorption increases with the pressure increase at the low pressure, and the mass change by gas diffusion will decrease due to the decrease in the compressibility factor of the gas. With the elevated temperature, the gas molecules move faster and then the greater gas diffusion rates make the process duration shorter. The gas diffusion rate decreases with the permeability decrease, and there is a limit of gas diffusion if the permeability is less than \(1.0\,\times \,10^{-15}\, \hbox { m}^{2}\). The results can provide insights for a better understanding of methane diffusion and adsorption in the shale rocks so as to optimize gas production performance of shale gas reservoirs.     

Thermomechanical cyclic behavior modeling of Cu-Al-Be SMA materials and structures

This paper concerns the behavior of Cu-Al-Be polycrystalline shape memory alloys under cyclic thermomechanical loadings. Sometimes, as shown by many experimental observations, a permanent inelastic strain occurs and increases with the number of cycles. A series of cyclic thermomechanical tests has been carried out and the origin of the residual strain has been identified as residual martensite. These observations have been used to develop a 3D macroscopic model for the superelasticity and stress assisted memory effect of SMAs able to describe the evolution of permanent inelastic strain during cycles. The model has been implemented in a finite elements code and used to simulate the behavior of antagonistic actuators based on SMA springs under cyclic thermomechanical loading with a residual displacement appearance.     

Locating and capacity planning for retailers of a new supply chain to compete on the plane

This paper investigates the network design problem of a two-level supply chain (SC), which is applicable for industries such as automotive, fuel and tyre manufacturing. Models presented in this paper aim at locating retail facilities of an SC and identifying their required capacities in the presence of existing competing retailers of a rival SC. We consider feasible locating space of the retail facilities on the continuous plane with bounded constraints and static competition among the rivals of the markets with deterministic demands. The problem is used for both essential and luxury product cases; hence, we consider elastic and inelastic demands, both. The models discussed in this paper are non-linear and non-convex which are difficult to solve. We use interval branch-and-bound as optimization algorithm for small size single-retailer problems, but for large-scale, multi-retailer problems we need to have more efficient methods. Therefore, we apply a heuristic algorithm (H1), a simulated annealing (SA) algorithm, an interior point (IP) algorithm, a genetic algorithm (GA) and a pattern search algorithm for solving multi-retailer problem with elastic and inelastic demands. Computational results obtained from performing different solution approaches for both elastic and inelastic show that mostly IP, PS, and H1 methods outperform the other approaches. The computational results on a real-life case are also promising. Several extended mathematical models and an example of a typical case with details are presented in the appendices of the paper.     

Low-cost,high-throughput and rapid-prototyped 3D-integrated dielectrophoretic channels for continuous cell enrichment and separation

Microfluidic devices for dielectrophoretic cell separation are typically designed and constructed using microfabrication methods in a clean room, requiring time and expense. In this paper, we describe a novel alternative approach to microfluidic device manufacture, using chips cut from conductor–insulator laminates using a cutter plotter. This allows the manufacture of microchannel devices with micron-scale electrodes along every wall. Fabrication uses a conventional desktop cutter plotter, and requires no chemicals, masks or clean-room access; functional fluidic devices can be designed and constructed within a couple of hours at negligible cost. As an example, we demonstrate the construction of a continuous dielectrophoretic cell separator capable of enriching yeast cells to 80% purity at 10 000 cells/s.     

Nanostructured polyaniline sensors

The conjugated polymer polyaniline is a promising material for sensors, since its conductivity is highly sensitive to chemical vapors. Nanofibers of polyaniline are found to have superior performance relative to conventional materials due to their much greater exposed surface area. A template-free chemical synthesis is described that produces uniform polyaniline nanofibers with diameters below 100 nm. The interfacial polymerization can be readily scaled to make gram quantities. Resistive-type sensors made from undoped or doped polyaniline nanofibers outperform conventional polyaniline on exposure to acid or base vapors, respectively. The nanofibers show essentially no thickness dependence to their sensitivity.     

Vitamin B12 supported on graphene oxide: As a bio‐based catalyst for selective aerobic oxidation of alcohols

The environmental impact of chemical processes has now opened new windows of opportunity for bio‐based catalysts. In this paper a highly active bio‐based catalyst of vitamin B₁₂ supported on graphene oxide nanosheets is reported for the selective aerobic oxidation of alcohols to the corresponding carbonyl compounds. Operational simplicity, mild reaction conditions, high yield and selectivity, non‐hazardous nature, commercial availability and affordability are the main advantages of this novel catalytic system.     

Structural and magnetic properties of nano-crystalline FeCoNiN thin films

Iron cobalt nickel nitride (FeCoNiN) thin films are prepared by sol-gel spin coating route. The structural, magnetic and surface properties of the thin films are evaluated. The crystalline nature of thin films was enhanced upon annealing, leading to increased crystallite size. The X-ray diffraction shows mixed phases with crystallite size in the range of 20–26.93 nm. Thin films show ferromagnetism at room temperature. Coercivity and saturation magnetization are in the range of 642–716 Oe and 2.5–7.5 emu/cm³ respectively. Both coercivity and saturation magnetization increased with annealing of thin films. Magnetic properties are related to the crystallinity of thin films. The increase in crystallite size results into an increase of magnetic properties. Rectangular shaped particles are seen on the surface of thin films. The same type of grains can be seen on the surface of thin films which confirmed the formation of FeCoNiN as predicted by XRD. These novel thin films might be used in memory devices and optoelectronic applications.