Synthesis of the branched-chain sugar aceric acid: a unique component of the pectic polysaccharide rhamnogalacturonan-II

Described herein is the synthesis of 3-C-carboxy-5-deoxy-L-xylose (aceric acid), a rare branched-chain sugar found in the complex pectic polysaccharide rhamnogalacturonan-II. The key synthetic step in the construction of aceric acid was the stereoselective addition of 2-trimethylsilyl thiazole to 5-deoxy-1,2-O-isopropylidene-alpha-L-erythro-pentofuran-3-ulose (2), which was prepared from L-xylose. The thiazole group was efficiently converted into the required carboxyl group via conventional transformations. Aceric acid was also synthesized by dihydroxylation of a 3-C-methylene derivative of 2 followed by oxidation of the resulting hydroxylmethyl group. The C-2 epimer of aceric acid was also synthesized using thiazole addition chemistry, starting from L-arabinose.     

Modeling of ion processes in atmospheric pressure matrix-assisted laser desorption/ionisation

Atmospheric pressure matrix-assisted laser desorption/ionization (AP-MALDI) has proven a convenient and rapid method for ion production in the mass spectrometric analysis of biomolecules. This technique, like other atmospheric pressure ionization methods, suffers from ion loss during ion transmission from the atmosphere into the vacuum of the mass spectrometer. In this work, a simple model describing ion formation and ion motion towards the inlet capillary of the mass spectrometer is described. Both the gas flow and electric field near the MALDI plate were numerically calculated using the boundary element method (BEM). The ions were moving along with the gas flow and drifting in the electric field in accordance with their ion mobility properties. The ion signal dependence on an electric field strength obtained in the proposed model correlates well with experimental results.     

BiScO3: centrosymmetric BiMnO3-type oxide

With neutron powder diffraction, electron diffraction, and second-harmonic generation, we have shown that BiScO3 has a structure closely related to that of multiferroic BiMnO3, but BiScO3 crystallizes in the centrosymmetric space group of C2/c. These results bring up a question about the origin of ferroelectricity in BiMnO3. BiScO3 may serve as a model system to understand the role of Mn3+ ions in the ferroelectricity of BiMnO3.     

Direct observation of azimuthal correlations between DNA in hydrated aggregates

This study revisits the classical x-ray diffraction patterns from hydrated, noncrystalline fibers originally used to establish the helical structure of DNA. We argue that changes in these diffraction patterns with DNA packing density reveal strong azimuthally dependent interactions between adjacent molecules up to approximately 40 A interaxial or approximately 20 A surface-to-surface separations. These interactions appear to force significant torsional "straightening" of DNA and strong azimuthal alignment of nearest neighbor molecules. The results are in good agreement with the predictions of recent theoretical models relating DNA-DNA interactions to the helical symmetry of their surface charge patterns.     

Structural order for one-scale and two-scale potentials

We perform molecular dynamics simulations to investigate the relationship between structural order and waterlike dynamic and thermodynamic anomalies in spherically symmetric potentials having either one or two characteristic length scales. Structural order is characterized by translational and orientational order parameters. We find that (i) dynamic and thermodynamic anomalies exist for both one-scale and two-scale ramp potentials, and (ii) waterlike structural order anomalies exist only for the two-scale ramp potential. Our findings suggest that the waterlike relationship between structural order and anomalies is related to the presence of two different length scales in the potential.     

X-ray structure analysis and the intervalent electron transfer in organic mixed-valence crystals with bridged aromatic cation radicals

X-ray crystallography identifies the aromatic donor group D = 2,5-dimethoxy-4-methylphenyl to be a suitable redox center for the construction of organic mixed-valence crystals owing to its large structural change attendant upon 1e oxidation to the cation-radical (D*(+)). The combination of cyclic voltammetry, dynamic ESR line broadening, and electronic (NIR) spectroscopy allows the intervalence electron transfer between the redox centers in the mixed-valence system D-br-D*(+) [where br can be an aliphatic trimethylene or an aromatic (poly)phenylene bridge] to be probed quantitatively. Independent measures of the electronic coupling matrix element (H) for D/D*(+) electron exchange via Mulliken-Hush theory accord with the X-ray crystallographic data-both sufficient to consistently identify the various D-br-D*(+) according to the Robin-Day classification. Thus, the directly coupled biaryl D-D*(+) is a completely delocalized cation in class III with the charge distributed equally over both redox centers. The trimethylene- and biphenylene-bridged cations D(CH(2))(3)D*(+) and D(ph)(2)D*(+) with highly localized charge distributions are prototypical class II systems involving moderately coupled redox centers with H approximately equal to 400 cm(-1). The borderline region between class II/III is occupied by the phenylene-bridged cation D(ph)D*(+); and the X-ray, CV, and NIR analyses yield ambivalent H values (which we believe to be) largely a result of an unusually asymmetric (20/80) charge distribution that is polarized between the D/D*(+) redox centers.     

Test of the Wiedemann-Franz law in an optimally doped cuprate

We present a study of heat and charge transport in Bi(2+x)Sr(2-x)CuO(6+delta) focused on the size of the low-temperature linear term of the thermal conductivity at optimal-doping level. In the superconducting state, the magnitude of this term implies a d-wave gap with an amplitude close to what has been reported. In the normal state, recovered by the application of a magnetic field, measurement of this term and residual resistivity yields a Lorenz number L=kappa(N)rho(0)/T=1.3+/-0.2L(0). The departure from the value expected by the Wiedemann-Franz law is thus slightly larger than our estimated experimental resolution.     

Intermittent self-organization of scroll wave turbulence in three-dimensional excitable media

We study the asymptotic behavior of scroll wave turbulence in large three-dimensional excitable media modeled by FitzHugh-Nagumo equations. The focus is on the type of turbulence caused by negative tension of scroll wave filaments, which is considered to be one of the mechanisms of cardiac fibrillation. We discovered that the initial increase in turbulence complexity can be followed by intermittent self-organization, when complex filament tangles are replaced by a small number of relatively stable triple filament strands. The intermittency is the result of a competition between the destabilizing effect of negative tension and mutual attraction of filaments with similar orientation.     

Intramolecular Fluorescence Quenching of Crowned 7-Aminocoumarins as Potential Fluorescent Chemosensors

The effects of the nature of solvent, temperature and complex formation with alkali and alkaline-earth metal cations, as well as protonation, on the efficiency and the kinetics of fluorescence of 3-azacrowned 7-diethylaminocoumarins have been studied. For the crown-ethers under investigation, the ratio of a dipole moment to the radius of Onsager cavity delta micro/rho is a constant value, and a macrocycle does not affect delta micro, and rho. The fluorescence of coumarin 1 in acetonitrile is quenched by an electron donor, triethylamine, with the Stern-Volmer constant being equal to (0.474+/-0.009) M(-1). The decrease in coumarin 1 fluorescence quantum yield upon the introduction of N-alkylazacrown moiety into position 3 is caused by an intramolecular photoinduced electron transfer from the nitrogen atom of macroheterocycle to the coumarin moiety, where the excitation is localized. The fluorescence quenching has an activation energy 2.32+/-0.05 kcal/mol in various hydrocarbons, and does not depend on the solvent viscosity. The fluorescence kinetics of free crowned coumarins in methanol is not monoexponential because of the existence of macrocycle conformers, or because of the hydrogen bond complex formation between the solvent and the nitrogen atom of macrocycle, in which the efficiency of intramolecular electron transfer is different. Upon complex formation with alkali and alkaline-earth metal cations and upon protonation, the fluorescence quantum yield increases and fluorescence decay becomes monoexponential.