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51.
The present work provides a generalization of Mayer's energy decomposition for the density-functional theory (DFT) case. It is shown that one- and two-atom Hartree-Fock energy components in Mayer's approach can be represented as an action of a one-atom potential V(A) on a one-atom density rho(A) or rho(B). To treat the exchange-correlation term in the DFT energy expression in a similar way, the exchange-correlation energy density per electron is expanded into a linear combination of basis functions. Calculations carried out for a number of density functionals demonstrate that the DFT and Hartree-Fock two-atom energies agree to a reasonable extent with each other. The two-atom energies for strong covalent bonds are within the range of typical bond dissociation energies and are therefore a convenient computational tool for assessment of individual bond strength in polyatomic molecules. For nonspecific nonbonding interactions, the two-atom energies are low. They can be either repulsive or slightly attractive, but the DFT results more frequently yield small attractive values compared to the Hartree-Fock case. The hydrogen bond in the water dimer is calculated to be between the strong covalent and nonbonding interactions on the energy scale. 相似文献
52.
Zlatopolskiy BD Loscha K Alvermann P Kozhushkov SI Nikolaev SV Zeeck A de Meijere A 《Chemistry (Weinheim an der Bergstrasse, Germany)》2004,10(19):4708-4717
The complete absolute configuration of hormaomycin 1 a has been established by HPLC and HPLC/MS experiments with appropriately derivatized 4-propylprolines, (2S,4S)-6 and (2R,4R)-6, as well as 4-(Z)-propenylprolines, cis-5 and trans-5, and also feeding experiments with enantiomerically pure samples of the deuterium-labeled 3-(2'-nitrocyclopropyl)alanine, (2S)-3,3-[D2]15 and (2S)-2,2'-[D2]15, and 4-(Z)-propenylproline 2',4-[D2]-(2S,4R)-5. The latter five amino acids were prepared for the first time and allowed one to unequivocally assign the hitherto unknown absolute configurations of the last four stereocenters in hormaomycin 1 a. As a bonus, some new information about the biosynthesis of this molecule has also been gathered. 相似文献
53.
A fast centroid molecular dynamics (CMD) methodology is proposed in which the effective centroid forces are predetermined through a force-matching algorithm applied to a standard path integral molecular dynamics simulation. The resulting method greatly reduces the computational cost of generating centroid trajectories, thus extending the applicability of CMD. The method is applied to the study of liquid para-hydrogen at two state points and liquid ortho-deuterium at one state point. The static and dynamical results are compared to those obtained from full adiabatic CMD simulations and found to be in excellent agreement for all three systems; the transport properties are also compared to experiment and found to have a similar level of agreement. 相似文献
54.
Peter M. Tolstoy Sergei N. Smirnov Ilya G. Shenderovich Nikolai S. Golubev Gleb S. Denisov Hans-Heinrich Limbach 《Journal of Molecular Structure》2004,700(1-3):19-27
1H and 15N NMR spectra of 10 complexes exhibiting strong OHN hydrogen bonds formed by 15N-labeled collidine and different proton donors, partially deuterated in mobile proton sites, have been observed by low-temperature NMR spectroscopy using a low-freezing CDF3/CDF2Cl mixture as polar aprotic solvent. The following proton donors have been used: HCl, formic acid, acetic acid, various substituted benzoic acids and HBF4. The slow hydrogen bond exchange regime could be reached below 140 K, which allowed us to resolve 15N signal splittings due to H/D isotopic substitution. The valence bond order model is used to link the observed NMR parameters to hydrogen bond geometries. The results are compared to those obtained previously [Magn. Reson. Chem. 39 (2001) S18] for the same complexes in the organic solids. The increase of the dielectric constant from the organic solids to the solution (30 at 130 K) leads to a change of the hydrogen bond geometries along the geometric correlation line towards the zwitterionic structures, where the proton is partially transferred from oxygen to nitrogen. Whereas the changes of spectroscopic and, hence, geometric parameters are small for the systems which are already zwitterionic in the solid state, large changes are observed for molecular complexes which exhibit almost a full proton transfer from oxygen to nitrogen in the polar liquid solvent. 相似文献
55.
Auchère F Raleiras P Benson L Venyaminov SY Tavares P Moura JJ Moura I Rusnak F 《Inorganic chemistry》2003,42(4):938-940
Superoxide reductases catalyze the monovalent reduction of superoxide anion to hydrogen peroxide. Spectroscopic evidence for the formation of a dinuclear cyano-bridged adduct after K(3)Fe(CN)(6) oxidation of the superoxide reductases neelaredoxin from Treponema pallidum and desulfoferrodoxin from Desulfovibrio vulgaris was reported. Oxidation with K(3)Fe(CN)(6) reveals a band in the near-IR with lambda(max) at 1020 nm, coupled with an increase of the iron content by almost 2-fold. Fourier transform infrared spectroscopy provided additional evidence with CN-stretching vibrations at 2095, 2025-2030, and 2047 cm(-)(1), assigned to a ferrocyanide adduct of the enzyme. Interestingly, the low-temperature electronic paramagnetic resonance (EPR) spectra of oxidized TpNlr reveal at least three different species indicating structural heterogeneity in the coordination environment of the active site Fe ion. Given the likely 6-coordinate geometry of the active site Fe(3+) ion in the ferrocyanide adduct, we propose that the rhombic EPR species can serve as a model of a hexacoordinate form of the active site. 相似文献
56.
57.
Dmitry E. Siyutkin Alexander S. Kucherenko Larisa L. Frolova Alexander V. Kuchin Sergei G. Zlotin 《Tetrahedron: Asymmetry》2013,24(12):776-779
Novel stereoisomeric natural pinane-derived bifunctional catalysts 3a–d bearing a pyrrolidine unit have been synthesized and examined in the asymmetric conjugate additions of carbonyl compounds to α-nitroalkenes. Six-membered cyclic ketones react with β-nitrostyrene derivatives in the presence of (1R,2R,3R,5R)-2-hydroxy-3-((S)-pyrrolidin-2-ylmethylamino) pinane 3b (10 mol %) with high conversion to afford with diastereoselectivity (dr (syn/anti) up to 97/3), the corresponding Michael adducts with enantiomeric purities of up to 88% ee. 相似文献
58.
Denis S. Baranov Aleksey A. Ryabichev Victor I. Mamatyuk Yurii V. Gatilov Victor G. Kartsev Sergei F. Vasilevsky 《Mendeleev Communications》2012,22(2):114-116
Reaction between 2-alkyl-4-arylbut-3-yn-2-ols and guanidine in refluxing pyridine affords 2-amino-5,5-dialkyl-4-arylmethylidene-2-oxazolines. 相似文献
59.
Nina I. Simirskaya Nikolai V. Ignat’ev Michael Schulte Sergei G. Zlotin 《Mendeleev Communications》2012,22(6):317-319
Terminal alkynols react with formaldehyde and secondary amines in aqueous ionic liquid [emim]HSO–4 in the presence of Cu(OAc) to afford the corresponding 1-(a-hydroxyalkyl)- or 1-(b-hydroxyalkyl)-2-(aminomethyl)acetylenes in better yields in comparison with the reaction in conventional organic solvents. The catalytic system can be easily recovered and recycled. 相似文献
60.