The role of acidic residues and of sodium ion adduction on the gas-phase H/D exchange of peptides and peptide dimers

Gas-phase H/D exchange is widely used for characterizing the structure of ions. However, many structural parameters that affect the rate of H/D exchange are poorly understood, which complicates the interpretation of experimental data. Here, the effects of sodium ion adduction on the rate of H/D exchange with D₂O for a series of peptides and peptide dimers with varying numbers of acidic residues are described. The maximum number of sodium ion adducts that can be accommodated by the peptides and peptide dimers in this study is N + 1, where N is the number of free carboxylic acid groups. The formation of methyl-esters at all carboxylic acid groups, or the replacement of all the acidic hydrogens with sodium ions, effectively shuts down H/D exchange with D₂O. In contrast, both the rate and the extent of H/D exchange with D₂O are increased for most of the peptides and peptide dimers by the adduction of an intermediate number of sodium ions. These results are consistent with the H/D exchange occurring via a salt-bridge mechanism and show that the presence of two carboxylic acid groups is much better than one. The results with peptide dimers also indicate that surface accessibility may not be a dominant factor in the extent of H/D exchange for these ions.     

Nucleophilic substitution of hydrogen in meso-nitroaryl-substituted porphyrins—unprotected at the NH-centers in the core ring

Unprotected 5-(4-nitrophenyl)-10,15,20-triphenylporphyrin and 5,10-bis(4-nitrophenyl)-15,20-diphenylporphyrin react in the presence of a base at low temperature with carbanions (which bear a leaving group X at the carbanionic center) affording vicarious nucleophilic substitution of hydrogen (VNS) products in good yields (50-89%). The reactivity is explained in terms of the predominance of the porphyrin N-anion resonance forms at this temperature.     

Synthesis and properties of (4-hydroxy-5-methoxycarbonylthieno)-tetrathiafulvalenes

6-Hydroxy-5-methoxycarbonylthieno[2,3-d]-1,3-dithiol-2-thione, -2-one, and 2-selenone were prepared by intramolecular cyclocondensation of 4-methoxycarbonylmethylthio-1,3-dithiol-2-thione-, 2-one-, and 2-selenone-5-carboxylic acid methyl ester. 2,6(7)-Di(methoxycarbonylmethylthio)-3,7(6)-di(methoxycarbonyl)tetra-thiafulvalene, 2-methoxycarbonylmethylthio-3-methoxycarbonyl-6,7-ethylenedithiotetrathiafulvalene, and the corresponding thieno-condensed tetrafulvalene derivatives were synthesized from them. The electrochemical oxidation potentials of the new tetrafulvalene derivatives were determined.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 6, pp. 761–768, June, 1993.     

Synthesis of the Deuterium Labeled Isoflavone-<Emphasis Type="Italic">O</Emphasis>-glucoside 8,3′,5′-D<Subscript>3</Subscript>-Daidzin

The regio- and stereospecific glycosylation of 8,3′,5′-trideuterodaidzein 1 with α-acetobromoglucose to provide 8,3′,5′-trideuterodaidzein-7-O-β-glucopyranoside 2 is presented.     

Structural Characteristics of Xyloglucan – Congo Red Aggregates as Observed by Small Angle X-ray Scattering

Xyloglucan is a type of hemicellulose with a cellulose backbone containing (1→6)-α-xylose or (1→2)-β-galactoxylose as a side chain. It is soluble in water. Its aqueous solution forms a gel or gel-like precipitate by addition of Congo red. Xyloglucan gel structures with various concentrations of Congo red were observed by small angle X-ray scattering (SAXS) at the nano-level. SAXS results indicated that the xyloglucan chains interacted with Congo red, and that an increase of concentration of Congo red induced a characteristic cross-linking domain, which consisted of a flat structure containing stacked xyloglucan chain assemblies. The Congo red molecules are inserted between the xyloglucan chains.     

Thermodynamic Data for the Complex Formation of Alkylamines and Their Hydrochlorides with α-Cyclodextrin in Aqueous Solution

The formation of complexes between α-cyclodextrin and n-alkylamines and their hydrochlorides has been studied in aqueous solution using calorimetric titrations. All alkylamines form stronger complexes than the corresponding hydrochlorides. The values of the reaction enthalpies are smaller for the alkylamine hydrochlorides compared with the alkylamines. By increasing the number of methylene groups, these differences become smaller. In addition, the reaction enthalpies for protonation of the alkylamines and their complexes with α-cyclodextrin have been measured. The heat of protonation of these complexes is always smaller compared with the alkylamines. Due to the protonation and the formation of a strong solvation shell around the ammonium group the interactions with α-cyclodextrins are weakened. From a thermodynamic cycle using all measured reactions, it can be concluded that the aggregation of the alkylamines with long alkyl chains (heptyl-, octyl-, and nonylamine) has an influence on the values of the reaction enthalpies and entropies for the protonated form only.This revised version was published online in July 2005 with a corrected issue number.     

Additivity Factors in the Binding of the Diethyltin(IV) Cation by Ligands Containing Amino and Carboxylic Groups at Different Ionic Strengths

Complex formation constants were determined potentiometrically (by a ISE-H⁺, glass electrode) in the systems, M²⁺ – L^z – H⁺ [M²⁺ = (C₂H₅)₂Sn²⁺, L^z = malonate, glycinate and ethylenediamine] at t = 25 ^∘C and 0.1 mol-L⁻¹≤ I/ ≤ 1 mol-L⁻¹ in NaCl_aq (0.1 mol-L⁻¹ ≤ I ≤ 0.75 mol-L⁻¹ for the ethylenediamine system). Thermodynamic values of formation constants, at infinite dilution, are [± 95% confidence interval, ^Tβ_pqr refer to the equilibrium, pM²⁺ + qL^z + rH⁺ = M_pL_qH_r^(2+z+r)]: for malonate, log₁₀ ^Tβ₁₁₀ = (5.47 ± 0.10); for glycinate, log₁₀ ^Tβ₁₁₀ = (9.54 ± 0.08), log₁₀ ^Tβ₁₁₁ = (12.97 ± 0.10); and for ethylenediamine, log₁₀ ^Tβ₁₁₀ = (10.47 ± 0.10), log₁₀ ^Tβ₁₂₀ = (16.17 ± 0.12) and log₁₀ ^Tβ₁₁₁ = (15.46 ± 0.10). The dependence on ionic strength of the formation constants was modeled by a simple Debye–Hückel type equation and by the SIT approach. By analyzing the stability of the species in the three different systems we found a simple additivity rule that can be expressed by the relationship: log₁₀ K = 6.46 n_N + 3.96 n_O − 0.60 (n_N²+ n_O²), with a mean deviation, ε(log₁₀ K) = 0.15 (K = equilibrium constant for the interaction of the organometal cation with the unprotonated or protonated ligand, n_N = number of amino groups and n_O = number of carboxylic groups of the ligand(s) involved in the formation reaction of complex species).     

The influence of the brewing process on the formation of biogenic amines in beers

Biogenic amines, as dabsyl derivatives, were determined in beer samples, intermediate products, and raw materials (malt and maize) by HPLC. A procedure for the extraction of the amines from malt and maize with diluted hydrochloric acid was optimised by combining a Response Surface Methodology with a Simultaneous Decision Making Approach. The results of the analysis indicate that, in brewing, technology and hygiene are the decisive factors that determine the amine concentrations in the final product.     

Synthesis of Chiral Cyclohexenones from α-Campholenic,Fencholenic, and β-Campholenic Derivatives

Summary. Optically active dimethylcyclohexenones, potential building blocks for enantioselective syntheses of various naturally active substances, were prepared. These compounds were obtained by oxidation with KMnO₄/Pb(OAc)₄ or ozonolysis of the corresponding cyclopentenic precursors, followed by aldol condensation. During the course of the preparation intermediate diols and chiral polyfunctional carbonyl derivatives were separated and identified analytically.     

Reaction of 2,5-diphenyl-1,2,3-diazaarsole with 2-diazopropane

Conclusions The reaction of 2-diazopropane with 2,5-diphenyl-1,2,3-diazaarsole (I) gave 2,4-di-phenyl-6,6-dimethyl-1-arsa-2,3-diazabicyclo[3.1.0]hex-3-ene (III).Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 1, pp. 230–231, January, 1986.The authors thank R. M. Mukhamadeeva and P. N. Sobolev for taking the spectra.