Development of an Accurate Mass Retention Time Database for Untargeted Metabolomic Analysis and Its Application to Plasma and Urine Pediatric Samples

Liquid-chromatography coupled to high resolution mass spectrometry (LC-HRMS) is currently the method of choice for untargeted metabolomic analysis. The availability of established protocols to achieve a high confidence identification of metabolites is crucial. The aim of this work is to describe the workflow that we have applied to build an Accurate Mass Retention Time (AMRT) database using a commercial metabolite library of standards. LC-HRMS analysis was carried out using a Vanquish Horizon UHPLC system coupled to a Q-Exactive Plus Hybrid Quadrupole-Orbitrap Mass Spectrometer (Thermo Fisher Scientific, Milan, Italy). The fragmentation spectra, obtained with 12 collision energies, were acquired for each metabolite, in both polarities, through flow injection analysis. Several chromatographic conditions were tested to obtain a protocol that yielded stable retention times. The adopted chromatographic protocol included a gradient separation using a reversed phase (Waters Acquity BEH C18) and a HILIC (Waters Acquity BEH Amide) column. An AMRT database of 518 compounds was obtained and tested on real plasma and urine samples analyzed in data-dependent acquisition mode. Our AMRT library allowed a level 1 identification, according to the Metabolomics Standards Initiative, of 132 and 124 metabolites in human pediatric plasma and urine samples, respectively. This library represents a starting point for future metabolomic studies in pediatric settings.     

Diffusion of magnetic field lines in a confined RFP plasma

Summary  A volume-preserving symplectic map is proposed to describe the magnetic field lines when the Taylor equilibriumis perturbed in a generic way. The standard scenario is observed by varying the perturbation strength, but the statistical properties in the chaotic regions are not simple due to the presence of boundaries and remnants of invariant structures. Simpler models of volume-preserving maps are proposed. The slowly modulated standard map captures the basic topological and statistical features. The diffusion is analytically described for large perturbations (above the break-up of the last KAM torus) in terms of correlation functions and for small perturbations using the adiabatic theory, provided that the modulation is sufficiently slow.     

Luminescent excited-state intramolecular proton-transfer (ESIPT) dyes based on 4-alkyne-functionalized [2,2'-bipyridine]-3,3'-diol dyes

Functionalized 6,6'-dimethyl-3,3'-dihydroxy-2,2'-bipyridine dyes (BP(OH)(2)) exhibit relatively intense fluorescence from the relaxed excited state formed by excited-state intramolecular proton transfer (ESIPT). Bromo functionalization of (BP(OH)(2)) species followed by palladium(0)-catalyzed reactions allows the connection (via alkyne tethers) of functional groups, such as the singlet-emitter diazaboraindacene (bodipy) group or a chelating module (terpyridine; terpy). The X-ray structure of the terpy-based compound confirms the planarity of the 3,3'-dihydroxy-bipyridine unit. The new dyes exhibit relatively intense emission on the nanosecond timescale when in fluid solution, in the solid state at 298 K, and in rigid glasses at 77 K. In some cases, the excitation wavelength luminescence was observed and attributed to 1) inefficiency of the ESIPT process in particular compounds when not enough vibrational energy is introduced in the Franck-Condon state, which is populated by direct light excitation or 2) the presence of an additional excited state that deactivates to the ground state without undergoing the ESIPT process. For some selected species, the effect of the addition of zinc salts on the absorption and luminescence spectra was investigated. In particular, significant fluorescence changes were observed as a consequence of probable consecutive formation of a 1:1 and 1:2 molecular ratio of ligand/zinc adducts owing to coordination of Zn(II) ions by the bipyridyldiol moieties, except when an additional terpyridine subunit is present. In fact, this latter species preferentially coordinates to the Zn(II) ion in a 1:1 molecular ratio and further inhibits Zn(II) interaction. In the hybrid Bodipy/BP(OH)(2) species, complete energy transfer from the BP(OH)(2) to the bodipy fluorophore occurs, leading to exclusive emission from the lowest-lying bodipy subunit.     

Self-assembled light-harvesting systems: Ru(II) complexes assembled about Rh-Rh cores

Ru(II) polypyridine species have been assembled about dirhodium(II, II) tetracarboxylate cores. The complexes prepared have general formulas [{(terpy)Ru(La)}n{Rh2(CH3COO)4-n(CH3CN)2}]2n+ (a-type compounds: terpy = 2,2':6',2' '-terpyridine; La = 4'-(p-carboxyphenyl)-2,2':6',2' '-terpyridine; n = 1, 1a; n = 2, cis-2a and trans-2a-cis and trans refer to the arrangement of the Ru(II) species around the dirhodium core; n = 3, 3a), [{(Lb)Ru(La)}n{Rh2(CH3COO)4-n(CH3CN)2}]2n+ (b-type compounds: Lb = 6-phenyl-2,4-di(2-pyridyl)-s-triazine; n = 1, 1b; n = 2, an inseparable mixture of cis-2b and trans-2b; n = 3, 3b; n = 4, 4b), and [{(terpy)Ru(Lc)}{Rh2(CH3COO)3(CH3CN)2}]2+ (1c; Lc = 6-(p-carboxyphenyl)-2,4-di(2-pyridyl)-s-triazine). As model species, also the mononuclear [(terpy)Ru(La)]2+ (5a), [(La)Ru(Lb)]2+ (5b), and [(terpy)Ru(Lc)]2+ (5c) have been prepared. All of the complexes have been characterized by several techniques, including NMR and mass spectra, and the stability of the various species is discussed. The absorption spectra of all of the compounds are dominated by the Ru(II) polypyridine moieties, showing intense ligand-centered (LC) bands in the UV region and intense metal-to-ligand charge-transfer (MLCT) bands in the visible. The compounds exhibit several metal-centered oxidation and ligand-centered reduction processes, which have been assigned to specific subunits. Both absorption and redox data indicate a supramolecular nature of the assembled systems. Efficient energy transfer from the MLCT triplet state of the Ru-based components to the lowest-energy excited state of the dirhodium core takes place for the a-type compounds at 298 K in acetonitrile solution, whereas such a process is inefficient for the b-type and c-type species, which exhibit the typical MLCT emission. At 77 K in butyronitrile matrix, Ru-to-Rh2 energy transfer is partly efficient for both the a-type and the b-type compounds and is inefficient for 1c. The reasons for such behavior are discussed by taking into account arguments concerning the driving force and reorganization energy of the complexes.     

Gas chromatography-mass spectrometry determination of 3-mercaptohexan-1-ol and 3-mercaptohexyl acetate in wine: a comparison of headspace solid phase microextraction and solid phase extraction methods

A gas chromatography-mass spectrometry method was established using headspace solid phase microextraction (HS-SPME) as the sampling procedure to analyse 3-mercaptohexan-1-ol (3-MH) and 3-mercaptohexyl acetate (3-MHA), two molecules with a tropical fruit aroma, in wine at trace level. This method offers important advantages, as it neither requires time-consuming sample preparation nor uses dangerous organic compounds, thus making control of wine aroma easier and suitable for routine analysis. As a comparison, a solid phase extraction (SPE) method, already described elsewhere for aroma analysis, was applied to quantify these analytes, extending this exhaustive enrichment to two important thiols. Detection limits for both the approaches were close to the sensory threshold value, resulting lower for the HS-SPME procedure and suitable for requirements in the oenological field. The application of the two proposed methods to 52 wines of different varieties gave similar results.     

Conformationally gated photoinduced processes within photosensitizer-acceptor dyads based on osmium(II) complexes with triarylpyridinio-functionalized terpyridyl ligands: insights from theoretical analysis

A theoretical analysis, based on density functional theory, has been carried out to study photoinduced processes within a recently experimentally characterized (Lainé, P. P.; Bedioui, F.; Loiseau, F.; Chiorboli, C.; Campagna, S. J. Am. Chem. Soc. 2006, http://dx.doi.org/10.1021/ja058357w.) series of Os(II) bis-tpy complexes (tpy = 2,2':6'2' '-terpyridine) functionalized by 2,4,6-triarylpyridinium groups, TP+. These dyad systems, designed to produce a charge-separated state (CSS) upon light excitation, are made up of a photosensitizer unit (P, the metal complex) and a tunable acceptor unit (A, the TP+). A full ab initio characterization of the electronic and structural properties of the lowest-lying triplet excited states, as well as of the CSS, allowed for a complete rationalization of the photoinduced processes taking place within the dyads. Among salient insights, theory allowed (i) substantiation of the inner P structural planarization as the relaxation mode of the MLCT states, (ii) confirmation of the existence of a ligand-centered triplet excited state (3LC) shown to essentially involve the nitro substituent of A (TP+-NO2) and lying very close in energy to the P-centered 3MLCT state, and (iii) a demonstration that the energy of the 3LC level is independent of intercomponent tilt angle (theta1). On this basis, the occurrence of a reversible electronic energy transfer between the 3MLCT and the 3LC states could be substantiated and shown to depend on the intramolecular conformation represented by theta1, which actually governs their electronic coupling (essentially via the degree of intercomponent conjugation). These computational issues were checked against experimental data already available and the results of a specifically undertaken photophysical study. Finally, CSS formation has been confirmed by studying the spin density patterns of reduced nitro-derivatized dyads. Taken together, these findings accurately account for the different excited-state behaviors of the dyads as a function of the level of structural restriction of their intercomponent conformation (and related amplitude for torsional fluctuations), thus providing theoretical evidence of conformationally gated photoinduced electron- and energy-transfer processes.     

An independent component analysis-based approach on ballistocardiogram artifact removing

Interest about simultaneous electroencephalography (EEG) and functional magnetic resonance imaging (fMRI) data acquisition has rapidly increased during the last years because of the possibility that the combined method offers to join temporal and spatial resolution, providing in this way a powerful tool to investigate spontaneous and evoked brain activities. However, several intrinsic features of MRI scanning become sources of artifacts on EEG data. Noise sources of a highly predictable nature such as those related to the pulse MRI sequence and those determined by magnetic gradient switching during scanning do not represent a major problem and can be easily removed. On the contrary, the ballistocardiogram (BCG) artifact, a large signal visible on all EEG traces and related to cardiac activity inside the magnetic field, is determined by sources that are not fully stereotyped and causing important limitations in the use of artifact-removing strategies. Recently, it has been proposed to use independent component analysis (ICA) to remove BCG artifact from EEG signals. ICA is a statistical algorithm that allows blind separation of statistically independent sources when the only available information is represented by their linear combination. An important drawback with most ICA algorithms is that they exhibit a stochastic behavior: each run yields slightly different results such that the reliability of the estimated sources is difficult to assess. In this preliminary report, we present a method based on running the FastICA algorithm many times with slightly different initial conditions. Clustering structure in the signal space of the obtained components provides us with a new way to assess the reliability of the estimated sources.     

Spectral Triples and the Super-Virasoro Algebra

We construct infinite dimensional spectral triples associated with representations of the super-Virasoro algebra. In particular the irreducible, unitary positive energy representation of the Ramond algebra with central charge c and minimal lowest weight h = c/24 is graded and gives rise to a net of even θ-summable spectral triples with non-zero Fredholm index. The irreducible unitary positive energy representations of the Neveu-Schwarz algebra give rise to nets of even θ-summable generalised spectral triples where there is no Dirac operator but only a superderivation.