Rewritable DNA microarrays

Thiol-terminated single-stranded deoxyribonucleic acids (ssDNA) can be immobilized onto pulsed plasma deposited poly(allylmercaptan) surfaces via disulfide bridge chemistry and are found to readily undergo nucleic acid hybridization. Unlike other methods for oligonucleotide attachment to solid surfaces, this approach is shown to be independent of substrate material or geometry, and amenable to highly efficient rewriting.     

Fluids of clusters in attractive colloids

We show that colloidal particles with attractive interactions induced by a nonadsorbing polymer exhibit a stable phase consisting of a fluid of clusters of particles. This phase persists even in the absence of any long-range repulsion due to charge, contrary to expectations based on simulation and theory. Cluster morphology depends strongly on the range of the interparticle attraction: With a shorter range, clusters are tenuous and branched; with a longer range, they are more compact.     

Phosphine dissociation and diffusion on Si(001) observed at the atomic scale

A detailed atomic-resolution scanning tunneling microscopy (STM) and density functional theory study of the adsorption, dissociation, and surface diffusion of phosphine (PH(3)) on Si(001) is presented. Adsorbate coverages from approximately 0.01 monolayer to saturation are investigated, and adsorption is performed at room temperature and 120 K. It is shown that PH(3) dissociates upon adsorption to Si(001) at room temperature to produce both PH(2) + H and PH + 2H. These appear in atomic-resolution STM images as features asymmetric-about and centered-upon the dimer rows, respectively. The ratio of PH(2) to PH is a function of both dose rate and temperature, and the dissociation of PH(2) to PH occurs on a time scale of minutes at room temperature. Time-resolved in situ STM observations of these adsorbates show the surface diffusion of PH(2) adsorbates (mediated by its lone pair electrons) and the dissociation of PH(2) to PH. The surface diffusion of PH(2) results in the formation of hemihydride dimers on low-dosed Si(001) surfaces and the ordering of PH molecules along dimer rows at saturation coverages. The observations presented here have important implications for the fabrication of atomic-scale P dopant structures in Si, and the methodology is applicable to other emerging areas of nanotechnology, such as molecular electronics, where unambiguous molecular identification using STM is necessary.     

High-level ab initio studies of the electronic excited states of the hydroxyl radical and water-hydroxyl complex

The lowest-energy electronic transitions in the hydroxyl radical and the hydrogen bound complex H(2)O.HO have been studied using ab initio methods. We have used the complete active-space self-consistent field and multireference configuration interaction (MRCI) methods to calculate vertical excitation energies and oscillator strengths. At the MRCI level the lowest-lying (2)Sigma(+)<--(2)Pi electronic transition is redshifted by about 2500 cm(-1) upon formation of the H(2)O.HO complex. We propose that this transition could be used to identify the complex in the gas phase, which in turn could be used to examine the role of H(2)O.HO in atmospheric reactions.     

The effect of shell side hydrodynamics on the performance of axial flow hollow fibre modules

Fluid flow and mass transfer experiments have been performed on axial flow hollow fibre modules of varying packing density (32 to 76%). Shell-side pressure drop was found to be proportional to (flowrate)ⁿ, where n varied from about 1.1 at high packing density to 1.5 at low packing density, for shellside Reynolds numbers < 350. Assuming an Ergun-type pressure drop relationship it was found that for packing densities < about 50% the inertial (turbulent) losses exceeded the viscous (laminar) losses. Inspection of cross-sections taken from the middle of modules revealed non-uniform fibre packing with regions of high and low packing density. The cross-sections also change along the length of the module. It is inferred that, in addition to axial flow along fibres, there is also a degree of stream splitting which provides transverse flow across fibres as fluid continuously seeks preferential paths through regions of lower packing density. The presence of transverse flow would explain the higher than expected velocity exponent. Mass transfer experiments involving the removal of oxygen from water flowing through the shell to a sweep gas in the fibre lumens produced higher than expected shell-side mass transfer coefficients. The results are correlated within ± 15% by Sh = (0.53 − 0.58φ)Re^0.53Sc^0.33. The exponent on Re is consistent with entry region conditions, caused by repeated stream splitting and transverse flow. Compared with mass transfer predicted for axial flow through a uniformly packed shell the experimental results are up to 2× higher, with the most significant enhancement at the lower packing densities. The implication of this work is that module design requires a more sophisticated approach than the traditional assumption of laminar flow through parallel axial ducts.     

Comparison of acoustic and perceptual measures of voice in male-to-female transsexuals perceived as female versus those perceived as male

The present study explored significant differences between male-to-female transgendered speakers perceived as male and those perceived as female in terms of speaking fundamental frequency (SFF) and its variability, vowel formants for /a/ and /i/, and intonation measures. Fifteen individuals who identified themselves as male-to-female transsexuals served as speaker subjects, in addition to 6 biological female control subjects and 3 biological male control subjects. Each subject was recorded reading the Rainbow Passage and producing the isolated vowels /a/ and /i/. Twenty undergraduate psychology students served as listeners. Results indicated that subjects perceived as female had a higher mean SFF and higher upper limit of SFF than subjects perceived as male. A significant correlation between upper limit of SFF and ratings of femininity was achieved.     

Micropatterning of Plasma Fluorinated Super-hydrophobic Surfaces

Photolithographic patterning of super-hydrophobic CF₄ plasma fluorinated polybutadiene films is shown to provide sufficient surface energy contrast to facilitate spatially organized deposition of metal salts and polystyrene microspheres from a nebulized mist or solution.     

Material order‐independent interface reconstruction using power diagrams

We have developed a new, multi‐material, piecewise linear interface reconstruction method that correctly locates the position of each material in the mesh cell and matches the required volume fractions with no material ordering required. This is different from other volume tracking interface reconstruction methods in which an improper material ordering may result in materials being incorrectly located within the cell. The new method utilizes a type of weighted Voronoi diagram, known as a power diagram, to reconstruct the interface from approximate material locations derived either from a particle model or quadrature formula. It works on structured and general polygonal grids, for an arbitrary number of materials and can be naturally extended to three dimensions. Published in 2007 by John Wiley & Sons, Ltd.     

Formation of self-supporting reversible cellular networks in suspensions of colloids and liquid crystals

In mixtures of thermotropic liquid crystals with spherical poly (methyl methacrylate) particles, self-supporting networklike structures are formed during slow cooling past the isotropic-to-nematic phase transformation. To characterize the process of network formation in terms of morphology, phase transformation kinetics, and mechanical properties, we have combined data from polarization and laser scanning confocal microscopy with calorimetric, NMR, and rheological results. Our data suggest that the mechanism of network formation is dominated by a broadened temperature and time interval of phase transformation rather than by particle size or concentration. The observation that the width of the transformation interval strongly depends on sample preparation supports the hypothesis that a third component, most likely alkane remnants slowly liberated from the particles, plays a crucial role. In addition, calorimetric findings for liquid crystal/colloid mixtures, heated and cooled up to 13 times, point to separation of the liquid crystal into two compartments with different phase transformation kinetics. This could be explained by redistribution and enrichment of alkane in the particle-composed network walls. A further increase of the storage modulus, G', and incomplete dissolution of the networks in the isotropic state indicate that the formation of two compartments during repeated temperature cycles stabilizes the network and confers strong memory effects.