Novel Stereoselective Phase Transfer Catalytic Synthesis and Some Applications of ( E )-2-Chlorovinylthioarenes and Hetarenes

A novel two-step method for the preparation of ( E )-2-chlorovinylthioarenes (or hetarenes) from thiols and 1,1,2-trichloroethane in the phase transfer catalytic systems solid K 2 CO 3 /solid KI/18-crown-6/xylene and solid KOH/18-crown-6/toluene has been developed. ( E )-2-chlorovinylthioarenes were isolated in yields up to 98%. Utilization of ( E )-2-chlorovinylthioarenes in the Heck and Stille reactions has been shown.     

Interfacing Click Chemistry with Automated Oligonucleotide Synthesis for the Preparation of Fluorescent DNA Probes Containing Internal Xanthene and Cyanine Dyes

Double‐labeled oligonucleotide probes containing fluorophores interacting by energy‐transfer mechanisms are essential for modern bioanalysis, molecular diagnostics, and in vivo imaging techniques. Although bright xanthene and cyanine dyes are gaining increased prominence within these fields, little attention has thus far been paid to probes containing these dyes internally attached, a fact which is mainly due to the quite challenging synthesis of such oligonucleotide probes. Herein, by using 2′‐O‐propargyl uridine phosphoramidite and a series of xanthenes and cyanine azide derivatives, we have for the first time performed solid‐phase copper(I)‐catalyzed azide–alkyne cycloaddition (CuAAC) click labeling during the automated phosphoramidite oligonucleotide synthesis followed by postsynthetic click reactions in solution. We demonstrate that our novel strategy is rapid and efficient for the preparation of novel oligonucleotide probes containing internally positioned xanthene and cyanine dye pairs and thus represents a significant step forward for the preparation of advanced fluorescent oligonucleotide probes. Furthermore, we demonstrate that the novel xanthene and cyanine labeled probes display unusual and very promising photophysical properties resulting from energy‐transfer interactions between the fluorophores controlled by nucleic acid assembly. Potential benefits of using these novel fluorescent probes within, for example, molecular diagnostics and fluorescence microscopy include: Considerable Stokes shifts (40–110 nm), quenched fluorescence of single‐stranded probes accompanied by up to 7.7‐fold light‐up effect of emission upon target DNA/RNA binding, remarkable sensitivity to single‐nucleotide mismatches, generally high fluorescence brightness values (FB up to 26), and hence low limit of target detection values (LOD down to <5 nM ).     

Matrix-isolation and electronic structure of vinyl-substituted silylenes and their complexes with bases [1]

Vinyl-substituted silylenes, 2,5-bis(methylene)-1-silacyclopentane-1,1-diyl ( 1 ) and 2-methylene-1-silacyclopentane-1,1-diyl ( 2 ), generated photochemically from the corresponding trisilanes in 3-methylpentane (3-MP) at 77 K, showed broad bands at 505 and 475 nm, respectively, which were assigned to the n(Si)-3p(Si) transition. The origin of the red shift in the n(Si)-3p(Si) transition is ascribed to the significant lowering of the 3p(Si) orbital level caused by the vinyl substitution on the silylene; the relatively high-lying 3p(Si) orbital can interact more effectively with the antibonding π* orbital than with the bonding π orbital of the vinyl group. The absorption spectra for 1 and 2 in the presence of several bases in 3-MP glass matrix shifted significantly to blue due to the formation of the corresponding base complexes. Analysis of the spectral change of the silylenes upon complexation with bases was very constructive for the understanding of the structural characteristics of substituted silylenes.     

Polyether-bridged bis(tert-butyl nitroxide) paramagnetic hosts showing receptor ability to calcium(II) and barium(II) ions

The title compounds, Ph2bNO and Ph3bNO, were designed as a biradical paramagnetic host, and their chelation ability was confirmed by inclusion of a size-matched alkaline-earth metal ion. The crystal structures of [Ca(hfac)₂(Ph2bNO)] and [Ba(hfac)₂(Ph3bNO)] were determined, where Hhfac stands for 1,1,1,5,5,5-hexafluoropentane-2,4-dione. The solution electron paramagnetic resonance spectra showed switching behavior. Five lines were found for Ph3bNO and charecterized as the hyperfine splitting due to the two nitrogen atoms. After addition of barium(II) ion, the spectrum turned to be three lines. Removal of the barium ion recovered the five line pattern. The present system can be regarded as a reversible magnetic-coupling switch by means of a supramolecular technique.     

Unusual regioselective intramolecular Diels-Alder reaction forming tricyclo[4.3.1.0(3,7)]decane system

The intramoleculae Diels-Alder reaction of cyclohexenone having an unsaturated ester side chain afforded tricyclo[4.3.1.0(3,7)]decanone in both a regio- and stereoselective manner under TMSCl-NEt(3)-ZnBr(2) conditions. Unexpectedly, the regiochemical control was against the conventional orbital requirement.     

A fractional equation for anomalous diffusion in a randomly heterogeneous porous medium

A fractional partial differential equation is derived for the spreading of matter in a saturated porous medium starting from precise hypotheses concerning the medium itself, which is a collection of intertwisted tubes with randomly distributed slopes, filled with quiescent fluid. Examining the fundamental solution of the fractional equation indicates that the second moment is not proportional to time, which is the signature of anomalous diffusion. The equation derived preserves non-negativity and also the total mass of matter.     

A direct electrochemical route to construct a polymer/manganese oxide layered structure

A layered nanocomposite with poly(diallyldimethylammonium), PDDA, intercalated between manganese oxide layers can be formed on a platinum electrode in a thin film form through a direct electrochemical route. The process involves a potentiostatic oxidation of aqueous Mn(2+) precursors in the presence of PDDA by applying a constant potential (+1.0 V vs Ag/AgCl).