New bonding modes of gas-phase deposited gamma-aminopropyltriethoxysilane on silica studied by 29Si CP/MAS NMR

Besides the well-known reaction between the ethoxy groups of the silane end of the gamma-aminopropyltriethoxysilane (APTS) molecule and the silanols of silica, the amino ends of APTS molecules were observed to react in the gas phase with ethoxy groups of other APTS molecules and silanols of silica at elevated temperatures on the silica surface, dehydroxylated at 600 degrees C, forming Si-N linkages, as established by 29Si CP/MAS NMR.     

Iron Atoms in Cr–Mn Antiferromagnetic Matrix

Hyperfine Interactions - The results of the Mössbauer effect measurements on bcc Cr rich Cr-Fe-Mn alloys in temperature range 12–296 K in zero- and in applied magnetic fields are...     

Hydrolytic stability of 2',3'-O-methyleneadenos-5'-yl 2',5'-di-O-methylurid-3'-yl 5'-O-methylurid-3'(2')-yl phosphate: implications to feasibility of existence of phosphate-branched RNA under physiological conditions

Hydrolytic reactions of 2',3'-O-methyleneadenos-5'-yl 2',5'-di-O-methylurid-3'-yl 5'-O-methylurid-3'(2')-yl phosphate (1a,b) have been followed by RP-HPLC over a wide pH range to evaluate the feasibility of occurrence of phosphate-branched RNA under physiological conditions. At pH <2, where the decomposition of is first order in [H3O+], the P-O5' bond is cleaved 1.5 times as rapidly as the P-O3' bond. Under these conditions, the reaction probably proceeds by an attack of the 2'-OH on the phosphotriester monocation. Over a relatively wide range from pH 2 to 5, the hydrolysis is pH-independent, referring to rapid initial deprotonation of the attacking 2'-OH followed by general acid catalyzed departure of the leaving nucleoside. The P-O5' bond is cleaved 3 times as rapidly as the P-O3' bond. At pH 6, the reaction becomes first order in [HO-], consistent with an attack of the 2'-oxyanion on neutral phosphate. The product distribution is gradually inversed: in 10 mmol L(-1) aqueous sodium hydroxide, cleavage of the P-O3' bond is favored over P-O5' by a factor of 7.3. The results of the present study suggest that the half-life for the cleavage of under physiological conditions is only 100 s. Even at pH 2, where is most stable, the half-life for its cleavage is less than one hour and the isomerization between and is even more rapid than cleavage. The mechanisms of the partial reactions are discussed.     

Hydrolysis of 2',3'-O-methyleneadenos-5'-yl bis(2',5'-di-O-methylurid-3'-yl) phosphate, a sugar O-alkylated trinucleoside 3',3',5'-monophosphate: implications for the mechanism of large ribozymes

Hydrolytic reactions of 2',3'-O-methyleneadenos-5'-yl bis(2',5'-di-O-methylurid-3'-yl) phosphate (1), a sugar O-alkylated trinucleoside 3',3',5'-monophosphate, have been followed by RP HPLC over a wide pH range. Under neutral and mildly acidic conditions, the only reaction observed was a pH-independent cleavage of the O-C5' bond of the 5'-linked nucleoside. Under more alkaline conditions nucleophilic attack by hydroxide ion starts to compete. The reaction is first order in [OH(-)] and becomes predominant at pH 10. Each of the 3'-linked nucleosides is displaced 2.9 times as readily as the 5'-linked one. To determine the beta(lg) value for the hydroxide ion catalyzed hydrolysis of 1, two diesters (2a,b) having 2',3'-O-methyleneadenosine (7) and 2',5'-di-O-methyluridine (4) as leaving groups were hydrolyzed under alkaline conditions. Since the beta(lg) value for this reaction is known, DeltapK(a) between 4 and 7 could be calculated. The beta(lg) for the hydrolysis of 1 was estimated to be -0.5 with use of this information. The mechanisms of the partial reactions and the role of leaving group properties in ribozyme reactions of large ribozymes are discussed.     

Solvent-free matrix dry-coating for MALDI imaging of phospholipids

A fast and simple, solvent-free matrix deposition protocol was developed for positive ionization mode phospholipid analysis in tissues. Finely ground 2,5-dihydroxybenzoic acid was deposited onto sagittal mouse brain sections using a dry-coating technique, in which solid matrix particles were filtered directly onto the tissue through a 20-microm stainless steel sieve. Phospholipid signals were obtained directly off these sections, allowing acquisition of high-resolution MS images. These images were compared to those from serial sections that were spray-coated with a thin-layer chromatography (TLC) reagent sprayer. Signals obtained from the dry matrix deposition method were comparable to those from spray-coated sections, producing identical localization patterns with a simpler and faster sample preparation with virtually no analyte delocalization. This approach was found to yield highly reproducible results, eliminating much of the variance caused by operator differences, and making it an attractive alternative to the currently used matrix application methods.     

Measurement setup for differential spectral responsivity of solar cells

Optical Review - We have developed a setup for measuring differential spectral responsivities of unifacial and bifacial solar cells under bias light conditions. The setup uses 30 high-brightness...     

New conformations and new types of helix sense reversals and defects in the chains of nonchiral poly(alkyl isocyanates)

Molecular mechanics studies of helix sense reversals and defects of the regularity in the helices of the same sense in the chains of poly(alkylisocyanates) were performed. The effect of medium was studied by using different values of the dielectric constant. Additionally to the reversals between the helix mirror images (MI) considered in the literature new types of reversals have been investigated. These reversals connect the helices having backbone torsion angles not only with opposite signs but also with inverse angle values (MII). For the MI reversals we report in addition to the small angle break conformations known from literature the discovery of new conformations of similar energy but with large angle breaks. Large angle reversals can be responsible for up to 50% of the chain persistence length in non-polar solvents. In vacuum MII reversals and defects have energies higher than MI reversals because of the strong electrostatic repulsion. At ϵ = 3.5 some defects have energy even lower that that of MI reversals.     

Collapse of diblock copolymer in poor solvent. Molecular dynamics study

The modification of unsaturated polyesters (UPE) by poly (ethylene glycol) (PEG) end groups [1] and the computer simulation of the collapse of a single molecule of a diblock copolymer AB consisting of PEG (A) and UPE (B) blocks [2] were reported recently by us. In the present paper the static and dynamic characteristics of the final collapsed structure were investigated by a molecular dynamics simulation. The structure and the local dynamic of collapsed homopolymers (AA and BB) were studied also. The initial conformations in all cases were taken near completely extended ones. The final structures of the diblocks are similar to the structure of a core (UPE) and shell (PEG) model. The differences in torsion angle distributions between diblock and homopolymer are maximal for the CCOC dihedral angles (both in UPE and PEG blocks). The orientational order of the COC vectors (‘chords’ along backbone of polymer chain) inside both blocks is larger in the diblock than in the homopolymer. Local orientational mobility of the COC vector and the translational mobility of the monomers is larger in the diblock than in the homopolymers for both blocks.     

High-accuracy measurement of specular spectral reflectance and transmittance

The realization of spectrophotometric quantities at the Helsinki University of Technology is based on our reference spectrometer. The reference spectrometer is a high-accuracy instrument developed for measuring spectral specular transmittance and reflectance in a wavelength range extending from ultraviolet to near-infrared. The relative uncertainty estimates for transmittance measurements of neutral-density filters are ca. 0.05%. For spectral reflectance the estimated uncertainties are between 0.14% and 0.34% depending on the sample reflectance and the measurement geometry. We have derived and verified equations that enable both the reflectance and transmittance of various samples to be predicted. Utilizing these equations, the reflectance and transmittance can be accurately calculated for samples with known refractive index. For precise calculations, the characteristics of the measurement beam must be taken into account.