Formation of multifunctional ligands by nucleophilic addition of alcohols and thiols to the alkyne groups in compound C5H5FeC5H4CCSCCH: Reactivity studies

The multifunctional ligands [(Z)-FcCCSC(H)C(H)XR] [X = O, R = Me (2a); X = O, R = Et (2b); X = S, R = Ph (3); X = S, R = C₆F₅ (5)] and [(Z,Z)-Fc(SR)CC(H)SC(H)C(H)SR] [R = Ph (4), C₆F₅ (6)] have been prepared through hydroalkoxylation and hydrothiolation processes of the alkyne groups in the compound FcCCSCCH 1. Reactions between compound 3 and the carbonyl metals Co₂(CO)₈, Os₃(CO)₁₀(NCMe)₂ and Fe₂(CO)₉ have allowed the synthesis of the polynuclear compounds [(Z)-{Co₂(CO)₆}(μ-η²-FcCCSC(H)C(H)SPh)] 9, [(Z)-Os₃(CO)₉(μ-CO){μ₃-η²-FcCCSC(H)C(H)(SPh)}] 10 and [(Z)-{Fe₃(CO)₉}[μ₃,η³-(CCS)-FcCCSC(H)C(H)(SPh)] 11. All the compounds have been characterized by elemental analysis, ¹H and ¹³C{¹H} NMR spectroscopy, mass spectrometry and the crystal structure of compounds [(Z)-FcCCSC(H)C(H)OMe] 2a and [{Co₂(CO)₆}₂(μ-η²:η²-FcCCSCCSiMe₃)] 7 have been solved by X ray diffraction analysis.     

Biosurfactant production by Rhodococcus erythropolis grown on glycerol as sole carbon source

The production of biosurfactant by Rhodococcus erythropolis during the growth on glycerol was investigated. The process was carried out at 28 degrees C in a 1.5-L bioreactor using glycerol as carbon source. The bioprocess was monitored through measurements of biosurfactant concentration and glycerol consumption. After 51 h of cultivation, 1.7 g/L of biosurfactant, surface, and interfacial tensions values (with n-hexadecane) of 43 and 15 mN/m, respectively, 67% of Emulsifying Index (E (24)), and 94% of oil removal were obtained. The use of glycerol rather than what happens with hydrophobic carbon source allowed the release of the biosurfactant, originally associated to the cell wall.     

Applications of stable isotope ratio mass spectrometry in cattle dung carbon cycling studies

Understanding the fate of dung carbon (C) in soils is challenging due to the ubiquitous presence of the plant‐derived organic matter (OM), the source material from which both dung‐derived OM and soil organic matter (SOM) predominantly originate. A better understanding of the fate of specific components of this substantial source of OM, and thereby its contribution to C cycling in terrestrial ecosystems, can only be achieved through the use of labelled dung treatments. In this short review, we consider analytical approaches using bulk and compound‐specific stable carbon isotope analysis that have been utilised to explore the fate of dung‐derived C in soils. Bulk stable carbon isotope analyses are now used routinely to explore OM matter cycling in soils, and have shown that up to 20% of applied dung C may be incorporated into the surface soil horizons several weeks after application, with up to 8% remaining in the soil profile after one year. However, whole soil δ¹³C values represent the average of a wide range of organic components with varying δ¹³C values and mean residence times in soils. Several stable ¹³C isotope ratio mass spectrometric methods have been developed to qualify and quantify different fractions of OM in soils and other complex matrices. In particular, thermogravimetry‐differential scanning calorimetry‐isotope ratio mass spectrometry (TG‐DSC‐IRMS) and gas chromatography‐combustion‐IRMS (GC‐C‐IRMS) analyses have been applied to determine the incorporation and turnover of polymeric plant cell wall materials from C₄ dung into C₃ grassland soils using natural abundance ¹³C isotope labelling. Both approaches showed that fluxes of C derived from polysaccharides, i.e. as cellulose or monosaccharide components, were more similar to the behaviour of bulk dung C in soil than lignin. However, lignin and its 4‐hydroxypropanoid monomers were unexpectedly dynamic in soil. These findings provide further evidence for emerging themes in biogeochemical investigations of soil OM dynamics that challenge perceived concepts of recalcitrance of C pools in soils, which may have profound implications for the assessment of the potential of agricultural soils to influence terrestrial C sinks. Copyright © 2010 John Wiley & Sons, Ltd.     

Cell-based assays: fuelling drug discovery

It has been estimated that over a billion dollars in resources can be consumed to obtain clinical approval, and only a few new chemical entities are approved by the US Food and Drug Administration (FDA) each year. Therefore it is of utmost importance to obtain the maximum amount of information about biological activity, toxicological profile, biochemical mechanisms, and off-target interactions of drug-candidate leads in the earliest stages of drug discovery. Cell-based assays, because of their peculiar advantages of predictability, possibility of automation, multiplexing, and miniaturization, seem the most appealing tool for the high demands of the early stages of the drug-discovery process. Nevertheless, cellular screening, relying on different strategies ranging from reporter gene technology to protein fragment complementation assays, still presents a variety of challenges. This review focuses on main advantages and limitations of different cell-based approaches, and future directions and trends in this fascinating field.     

Enantioselective ethylation of aldehydes with 1,3-N-donor ligands derived from (+)-camphoric acid

Derivatives of (+)-camphoric acid were prepared by a short and simple synthetic sequence and proved to be excellent ligands for the enantioselective ethylation of benzaldehyde with diethylzinc, with ees of up to 96% being obtained. The most efficient ligand was tested with several aromatic aldehydes and ees of up to 99% were observed. Structural features of the ligands are determinant for achieving high enantioselectivities.     

Properties of Co-Mo coatings obtained by electrodeposition at pH 6.6

Cobalt-molybdenum coatings were prepared by electrodeposition in a sulfate-citrate bath and their morphology, structure and magnetic properties were analysed. Concentrations of 0.1 mol dm^–3 CoSO₄ and 0.005 mol dm^–3 Na₂MoO₄ at pH 6.6 led to Co-Mo deposits of 20–23% Mo that can be grown to several microns over graphite or copper substrates. At low deposition potentials or current densities, the deposits presented a close-packed hexagonal structure (hcp) that evolved to a (100)+(110) preferred orientation and acicular morphology as the deposit thickness increased. When the deposition potential or the current density was made more negative, a mixed crystalline+amorphous structure was obtained. The degree of crystallinity depended on the thickness: thin films were more amorphous than the thicker ones. Co-Mo deposits showed lower saturation magnetization (M_s) and coercivity (H_c) than the pure cobalt deposits. The crystalline+amorphous films showed the lowest H_c values (around 40 Oe).     

Electrodeposition for obtaining homogeneous or heterogeneous cobalt-copper films

Direct electrodeposition of heterogeneous deposits may be an alternative method for preparing cobalt-copper coatings with magnetoresistive properties. Co-Cu electrodeposition was obtained in sulfate baths containing different citrate concentrations in order to prepare either homogeneous or heterogeneous Co-Cu deposits. X-ray diffraction (XRD) and voltammetric stripping analysis were used to study the kind of deposits formed. Citrate-free baths produced heterogeneous films, although dendritic growth was observed, thus increasing the deposit's thickness. Increasing the Cu(II)/Co(II) ratio in solution enabled the formation of smoother deposits. The presence of citrate at up to twice the total metallic concentration in the bath improved the morphological aspects of the deposits, their structural heterogeneity being maintained. Higher citrate concentrations induced the loss of heterogeneity, and both electrochemical and diffraction peaks tended towards single peaks. Homogeneous Co-Cu deposits, formed by a solid solution structure, were obtained in highly complexed citrate baths.     

Triggering Activity of Catalytic Rod‐Like Supramolecular Polymers

Supramolecular polymers based on benzene‐1,3,5‐tricarboxamides (BTAs) functionalized with an L ‐ or D ‐proline moiety display high catalytic activity towards aldol reactions in water. High turnover frequencies (TOF) of up to 27×10^?4 s^?1 and excellent stereoselectivities (up to 96 % de, up to 99 % ee) were observed. In addition, the catalyst could be reused and remained active at catalyst loadings and substrate concentrations as low as 0.1 mol % and 50 mM , respectively. A temperature‐induced conformational change in the supramolecular polymer triggers the high activity of the catalyst. The supramolecular polymer’s helical sense in combination with the configuration of the proline (L ‐ or D ‐) is responsible for the observed selectivity.     

Delta2D and Proteomweaver: Performance evaluation of two different approaches for 2‐DE analysis

2‐DE is a fundamental technology used in proteomics research. However, despite its high capacity to simultaneously separate several proteins for subsequent identification and quantitative comparison studies, a drawback for this technique is its limited reproducibility, especially when comparing data from different laboratories. 2‐DE‐related variability can be broadly divided into two categories: experimental and post‐experimental. Experimental variability depends on physical and chemical parameters, whereas post‐experimental variability arises when gels are analyzed by different software packages, particularly when different workflows are followed. In this paper, we compared the analysis performance of two software packages, Delta2D and Proteomweaver, using both standard and experimental gel images. Using standard gel images, the false negative spot count was 50% lower, the false positive count was 77% lower, the true positive count was 19% higher and spot matching was 4% higher in Delta2D when compared to Proteomeweaver. Using experimental gel images, we found that the total amount of time taken to complete the analysis with Delta2D was 30% that of the time needed with Proteomweaver and required fewer user interventions. The differences between ease of use and workflow strategy of these programs is discussed.     

Trifluoroacetic Acid in 2,2,2‐Trifluoroethanol Facilitates SNAr Reactions of Heterocycles with Arylamines

Small‐molecule drug discovery requires reliable synthetic methods for attaching amino compounds to heterocyclic scaffolds. Trifluoroacetic acid‐2,2,2‐trifluoroethanol (TFA‐TFE) is as an effective combination for achieving S_NAr reactions between anilines and heterocycles (e.g., purines and pyrimidines) substituted with a leaving group (fluoro‐, chloro‐, bromo‐ or alkylsulfonyl). This method provides a variety of compounds containing a “kinase‐privileged fragment” associated with potent inhibition of kinases. TFE is an advantageous solvent because of its low nucleophilicity, ease of removal and ability to solubilise polar substrates. Furthermore, TFE may assist the breakdown of the Meisenheimer–Jackson intermediate by solvating the leaving group. TFA is a necessary and effective acidic catalyst, which activates the heterocycle by N‐protonation without deactivating the aniline by conversion into an anilinium species. The TFA‐TFE methodology is compatible with a variety of functional groups and complements organometallic alternatives, which are often disadvantageous because of the expense of reagents, the frequent need to explore diverse sets of reaction conditions, and problems with product purification. In contrast, product isolation from TFA‐TFE reactions is straightforward: evaporation of the reaction mixture, basification and chromatography affords analytically pure material. A total of 45 examples are described with seven discrete heterocyclic scaffolds and 2‐, 3‐ and 4‐substituted anilines giving product yields that are normally in the range 50–90 %. Reactions can be performed with either conventional heating or microwave irradiation, with the latter often giving improved yields.