A cation-pi binding interaction with a tyrosine in the binding site of the GABAC receptor

GABA(C) (rho) receptors are members of the Cys-loop superfamily of neurotransmitter receptors, which includes nicotinic acetylcholine (nACh), 5-HT(3), and glycine receptors. As in other members of this family, the agonist binding site of GABA(C) receptors is rich in aromatic amino acids, but while other receptors bind agonist through a cation-pi interaction to a tryptophan, the GABA(C) binding site has tyrosine at the aligning positions. Incorporating a series of tyrosine derivatives at position 198 using unnatural amino acid mutagenesis reveals a clear correlation between the cation-pi binding ability of the side chain and EC(50) for receptor activation, thus demonstrating a cation-pi interaction between a tyrosine side chain and a neurotransmitter. Comparisons among four homologous receptors show variations in cation-pi binding energies that reflect the nature of the cationic center of the agonist.     

Short synthesis of 4-aryl-3-pyrrolin-2-ones

A three step, convergent synthesis of 4-aryl-3-pyrrolin-2-ones from a tetramic acid has been developed. The key transformation utilized a Suzuki-Miyaura cross-coupling reaction between a 4-tosyloxy-3-pyrrolin-2-one and an arylboronic acid. This work also provides access to 4-arylpyrrolidin-2-ones, cyclic analogs of γ-aminobutyric acid (GABA). Hydrogenation of 4-(4′-chlorophenyl)-3-pyrrolin-2-one proceeded smoothly to give baclofen lactam.     

Epoxy‐functionalized,low‐glass‐transition‐temperature latex. II. Interdiffusion versus crosslinking in the presence of a diamine

This article describes the results of experiments examining the competition between the polymer diffusion rate and the crosslinking rate in low‐glass‐transition‐temperature, epoxy‐containing latex films in the presence of a diamine. We examined films formed from donor‐ and acceptor‐labeled poly(butyl acrylate‐co‐methyl methacrylate‐co‐glycidyl methacrylate) copolymer latex and studied the influence of several parameters on the growth rate of gel content and the rate of polymer diffusion. These factors include the molecular weight of the latex polymer, the presence or absence of a diamine crosslinking agent, and the cure protocol. The results were compared to the predictions of a recent theory of the competition between crosslinking and polymer diffusion across interfaces. In the initially formed films, polymer diffusion occurs more rapidly than the chemical reaction rate. Therefore, these films fall into the fast‐diffusion category of this model. In our system (unlike in the model), the latex polymer has a broad distribution of molecular weights and a distribution of diffusivities. The shortest chains contribute to the early time diffusion that we measure. At later stages of our experiment, slower diffusing species contribute to the signal that we measure. The diffusion time decreases substantially, and we observe a crossover to a regime in which the chemical reaction dominates. The increases in chain branching and gel formation bring polymer diffusion to a halt. © 2002 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 40: 4098–4116, 2002     

SITE-DIRECTED MUTAGENESIS OF THE LH2 LIGHT-HARVESTING COMPLEX OF Rhodobacter sphaeroides: CHANGING βLys23 TO Gin RESULTS IN A SHIFT IN THE 850 nm ABSORPTION PEAK

The present study describes the construction of a Rhodobacter sphaeroides light-harvesting (LH2) mutant in which the charged residue βSLys23 is changed by site-directed mutagenesis to a Gin residue, and the characterization of the resulting mutant complex by a range of spectroscopic techniques. In the 77 K absorption spectrum of the mutant, the peak equivalent to the 850 nm peak in the wild-type membrane is blue-shifted by approximately 18 nm to 837 nm; except for this blue-shift, the 77 K. fluorescence excitation and emission spectra and the circular dichroism spectrum of the mutant are very similar to the equivalent spectra from the wild-type membranes, suggesting that the mutation βLys23 → Gin probably does not cause any major changes in the conformation or aggregation state of these membranes. Possible causes of the 18 nm blue-shift in the absorption spectrum are discussed.     

Synthetic routes for a new family of chiral tetradentate ligands containing pyridine rings

A series of new tetradentate ligands containing two bipyridine groups or two pyridine moieties carrying amine substituents has been synthesised either from 5'- and 6'-substituted chiral bipyridines, or from chiral pyridine derivatives. These precursors have been prepared from (-)-alpha-pinene or (-)-myrtenal, respectively. The structures of three tetradentate-, and of five chiral bipyridine ligands have been determined by X-ray diffraction.     

High-performance liquid chromatographic strategies for the determination and confirmation of anticoagulant rodenticide residues in animal tissues

A comprehensive approach to the analysis of anticoagulant rodenticide residues in animal tissues based on high-performance liquid chromatography (HPLC) has been developed. Residues of warfarin, coumatetralyl, difenacoum, brodifacoum, bromadiolone, diphacinone and chlorophacinone were extracted with chloroformacetone (1:1, v/v). Extracts were cleaned-up by an integrated gel permeation and adsorption chromatographic procedure which divided the rodenticides into two groups. Residues were then determined and confirmed using normal-phase, ion-pair and weak ion-exchange HPLC techniques. Ion-pair gradient separation resolved all seven rodenticides in a single chromatographic analysis. UV detection methods were employed for all seven rodenticides. Use of a diode array detection system permitted additional confirmation of residues down to 0.1 mg kg-1 by matching UV spectra and derivatives of spectra. Sensitive fluorescence detection was possible for the coumarin-based rodenticides but not for diphacinone and chlorophacinone. Post-column pH-switching fluorescence detection methods were shown to be superior to other methods of fluorescence detection of coumarin-based rodenticides. Recoveries from spiked liver tissue were around 90% at levels from 0.05 to 1 mg kg-1. Detection limits of around 0.002 mg kg-1 for most rodenticides and of 0.01 mg kg-1 for warfarin could be achieved with animal tissue extracts.     

Mapping the binding site topology of amyloid protein aggregates using multivalent ligands

A key process in the development of neurodegenerative diseases such as Alzheimer''s and Parkinson''s diseases is the aggregation of proteins to produce fibrillary aggregates with a cross β-sheet structure, amyloid. The development of reagents that can bind these aggregates with high affinity and selectivity has potential for early disease diagnosis. By linking two benzothiazole aniline (BTA) head groups with different length polyethylene glycol (PEG) spacers, fluorescent probes that bind amyloid fibrils with low nanomolar affinity have been obtained. Dissociation constants measured for interaction with Aβ, α-synuclein and tau fibrils show that the length of the linker determines binding affinity and selectivity. These compounds were successfully used to image α-synuclein aggregates in vitro and in the post-mortem brain tissue of patients with Parkinson''s disease. The results demonstrate that multivalent ligands offer a powerful approach to obtain high affinity, selective reagents to bind the fibrillary aggregates that form in neurodegenerative disease.

Multivalent ligands offer a powerful approach to obtain high affinity reagents to bind the aggregates that form in neurodegenerative disease. Selectivity for different proteins was achieved by using different linkers to connect the head groups.     

The relationship between the Ritz variational method and Frobenius's method of solving Schrödinger's equation

The solution of a linear homogeneous differential equation (in particular the Schrödinger equation) by expansion of the solutions (wave functions) in a discrete complete set of function is considered. The coefficients of the expansion are determinable by either the Ritz variational (integral) method, or by a generalisation of Frobenius's (non-integral) method. Each method leads to an infinite matrix eigenvalue equation. It is shown that the integral and non-integral matrix equations are related by the overlap matrix of the set of basis functions. The effects of truncating the infinite matrices to finite order are described. A hybrid method of transformation to a matrix representation is proposed, which employs some techniques from each of the original methods.

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Zusammenfassung Die Lösung einer linearen homogenen Differentialgleichung (besonders der Schrödinger-Gleichung) durch Entwicklung der Lösungen (Wellenfunktionen) nach einem diskreten vollständigen Satz von Funktionen wird untersucht. Die Entwicklungskoeffizienten sind entweder durch die Variations-Methode (Integral-Methode) oder durch Verallgemeinerung der Methode von Frobenius (Methode ohne Integrale) bestimmbar. Beide Methoden führen zur einer unendlichen Matrix-Eigenwert-Gleichung. Es wird gezeigt, daß die Matrizengleichungen der beiden Verfahren durch die Überlappungsmatrix des Satzes von Basisfunktionen in Beziehung stehen. Es werden die Effekte beschrieben, die sich ergeben, wenn die Matrizen von unendlicher auf endliche Ordnung reduziert werden. Eine Hybridmethode zur Transformation in eine Matrixdarstellung wird vorgeschlagen, die einige Rechenoperationen aus jeder der Originalmethoden anwendet.

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Résumé On considère la résolution d'une équation différentielle linéaire homogène (en particulier l'équation Schrödinger) en développant les solutions (fonctions d'ondes) dans un groupe discret complet de fonctions. Les coefficients du développement peuvent être déterminés par la méthode de la variation de Ritz (intégral) ou par une généralisation de la méthode de Frobenius (non-intégral). Chaque méthode mène à une équation infinie matrice eigenvalue. On montre que les équations matrice, intégrales et non-intégrales, sont reliées par la matrice à recouvrement du groupe des fonctions fondamentales. On décrit les effects de tronquer les matrices infinies en ordre limité. On présente une méthode hybride de transformation à une représentation de matrice, qui utilise des techniques de chacune des méthodes originales.

     

An NMR study of some substituted 1,5-benzodiazepines and 1,5-benzothiazepines

The ¹H NMR spectra of a series of substituted 1,5-benzodiazepines and thiazepines are analysed by the LAOCN3 fitting program. The saturated molecules appear to exist in puckered chair conformations. The effect of increasing methyl substitution is a reduction in the amount of puckering with a flattening of the chair. Symmetrical substitution of the heterocyclic rings allows a ready inversion at room temperature whereas asymmetrical substitution stabilises the least hindered conformation. Variable temperature measurements are reported.     

Convergence rates of a global optimization algorithm

Second order conditions for the (pseudo-) convexity of a function restricted to an affine subspace are obtained by extending those already known for functions on ⁿ . These results are then used to analyse the (pseudo-) convexity of potential functions of the type introduced by Karmarkar.This research was completed while the first author was on sabbatical leave at the Département d'Informatiques et de Recherche Opérationelle, Université de Montréal, and supported by NSERC (grant Q015807). This research was also supported by NSERC (grants A8312 and A5408) and la Coopération franco-québécoise (project 20-02-13).