Theoretical study of mechanism and selectivity of copper-catalyzed C-H bond amidation of indoles

Density functional theory calculations are used to study the reaction mechanism and origins of C2 selectivity in a copper(I)-catalyzed amidation of indoles. It is shown that concerted metalation-deprotonation is not able to reproduce the observed regioselectivity. Instead, an unprecedented mechanism based on a four-center reductive elimination is proposed to be responsible for the reaction outcome. This mechanism has a lower reaction barrier and is able to reproduce the experimentally observed selectivity. A possible alternative mechanism involving a Cu(II) species instead of Cu(III) is presented, but it is shown that higher energy barriers are associated with this mechanism. An important technical detail is that addition of dispersion effects to the B3LYP results is necessary to reproduce the observed selectivity, although not important for the overall mechanistic proposal.     

Effective method for the computation of optical spectra of large molecules at finite temperature including the Duschinsky and Herzberg-Teller effect: the Qx band of porphyrin as a case study

The authors extend their recent method for the computation of vibrationally resolved optical spectra of large molecules, including both the Duschinsky rotation and the effect of finite temperature in the framework of the Franck-Condon (FC) approximation, to deal with the more general case of the Herzberg-Teller (HT) model, where also the linear dependence of the transition dipole moment on the nuclear coordinates is taken into account. This generalization allows us to investigate weak and vibronically allowed transitions by far extending the range of application of the method. The calculation of the spectra of sizable molecules is computationally demanding because of the huge number of final vibrational states that must be taken into account, and the inclusion of HT terms further increases the computational burden. The method presented here automatically selects the relevant vibronic contributions to the spectrum, independent of their frequency, and it is able to provide fully converged spectra with a modest computational requirement. The effectiveness of the method is illustrated by computing the HT absorption and fluorescence Q(x) spectra of free-base porphyrin both at T=0 K and at room temperature, performing for the first time an exact treatment of vibrations in harmonic approximation. Q(x) spectra are compared to experiments and FC/HT interferences are analyzed in detail.     

Ab initio prediction of the emission color in phosphorescent iridium(III) complexes for OLEDs

We performed fully first principles quantum mechanical calculations of the ground and excited state geometries and harmonic vibrational frequencies of two prototype cationic Ir(III) complexes showing high emission quantum efficiencies. Thanks to recent theoretical advances, we have been able for the first time to simulate their vibrationally resolved emission spectra. Our results, in good agreement with the experiment, allow us to calculate the CIE coordinates and therefore the emission color of this important class of emitters for OLEDs and LECs.     

Liquidlike behavior of supercritical fluids

The high frequency dynamics of fluid oxygen has been investigated by inelastic x-ray scattering, at high pressures and room temperature. In spite of the markedly supercritical conditions (T approximately 2Tc, P>10(2)Pc), the sound velocity exceeds the hydrodynamic value of about 20%, a feature which is the fingerprint of liquidlike dynamics. The comparison of the present results with literature data obtained in several fluids allow us to identify the extrapolation of the liquid-vapor-coexistence line in the (P/Pc, T/Tc) plane as the relevant edge between liquidlike and gaslike dynamics. More interestingly, this extrapolation is very close to the non-metal-metal transition in hot dense fluids, at pressure and temperature values as obtained by shock wave experiments. This result points to the existence of a connection between structural modifications and transport properties in dense fluids.     

High pressure solid state chemistry of carbon dioxide

A review of experimental and theoretical studies performed over the past three decades on high pressure chemistry of solid CO2, at 0-80 GPa and 40-3000 K, is presented. Emphasis is placed on the recently discovered non-molecular covalent crystalline phase V, and its glassy counterpart a-CO2, along with other molecular phases, whose interpretation is crucial for determining the reaction path to non-molecular CO2. The matter is still under debate, and many open issues are outlined, such as the true reaction mechanism for forming phase V. Finally, we propose arguments to stimulate possible future research in a more extended P-T range. This work is a tutorial review and should be of general interest both for solid state chemistry and condensed matter physics communities.     

Neutron and X-ray diffraction study on polymorphism in lithium orthotantalate,Li3TaO4

The structures of the low-and high-temperature modifications of lithium orthotantalate, Li₃TaO₄, have been determined by neutron and X-ray diffraction methods. The low-temperature, or β, phase has symmetry $\text{C2}\text{c}$ and lattice parameters a₁ = 8.500(3), b₁ = 8.500(3), c₁ = 9.344(3)Å, and β = 117.05(2)°. The high-temperature, or α, phase has symmetry P2 and lattice parameters a_h = 6.018(1), b_h = 5.995(1), c_h = 12.865(2)Å, and β_h = 103.53(2)°. Both structures are ordered. The β-phase has a rock salt-type structure with a 3 : 1 ordering of the Li⁺ and Ta⁵⁺ ions. Its structure can be generated from the low-temperature modification by means of a complex pattern of shifts of the Ta⁵⁺ ions.     

Recent trends and advances in microbial electrochemical sensing technologies: An overview

Microbial electrochemical systems utilize the electrochemical interaction between microorganisms and electrode surfaces to convert chemical energy into electrical energy, offering a promise as technologies for wastewater treatment, bioremediation, and biofuel production. Recently, growing research attention has been devoted to the development of microbial electrochemical sensrs as biosensing platforms. Microbial electrochemical sensors are a type of microbial electrochemical technology (MET) capable of sensing through the anodic or the cathodic electroactive microorganisms and/or biofilms. Herein, we review and summarize the recent advances in the design of microbial electrochemical sensing approaches with a specific overview and discussion of anodic and cathodic microbial electrochemical sensor devices, highlighting both the advantages and disadvantages. Particular emphasis is given on the current trends and strategies in the design of low-cost, convenient, efficient, and high performing METs with different biosensing applications, including toxicity monitoring, pathogen detection, corrosion monitoring, as well as measurements of biological oxygen demand, chemical oxygen demand, and dissolved oxygen. The conclusion provides perspectives and an outlook to understand the shortcomings in the design, development status, and sensing applications of microbial electrochemical platforms. Namely, we discuss key challenges that limit the practical implementation of METs for sensing purposes and deliberate potential solutions, necessary developments, and improvements in the field.     

FCclasses3: Vibrationally-resolved spectra simulated at the edge of the harmonic approximation

We introduce FCclasses3, a code to carry out vibronic simulations of electronic spectra and nonradiative rates, based on the harmonic approximation. Key new features are: implementation of the full family of vertical and adiabatic harmonic models, vibrational analysis in curvilinear coordinates, extension to several electronic spectroscopies and implementation of time-dependent approaches. The use of curvilinear valence internal coordinates allows the adoption of quadratic model potential energy surfaces (PES) of the initial and final states expanded at arbitrary configurations. Moreover, the implementation of suitable projectors provides a robust framework for defining reduced-dimensionality models by sorting flexible coordinates out of the harmonic subset, so that they can then be treated at anharmonic level, or with mixed quantum classical approaches. A set of tools to facilitate input preparation and output analysis is also provided. We show the program at work in the simulation of different spectra (one and two-photon absorption, emission and resonance Raman) and internal conversion rate of a typical rigid molecule, anthracene. Then, we focus on absorption and emission spectra of a series of flexible polyphenyl molecules, highlighting the relevance of some of the newly implemented features. The code is freely available at http://www.iccom.cnr.it/en/fcclasses/ .