Optical implementation of a constant-time multicomparand bit-parallel magnitude-comparison algorithm using wavelength- and polarization-division multiplexing with application to parallel database processing

We present a word- and bit-parallel magnitude-comparison architecture that permits multiple comparands to be compared with multiple relations in constant time. The proposed magnitude-comparison algorithm uses a novel polarization and wavelength-encoding scheme to achieve a fast, scalable realization. Distinctive features of the proposed architecture include (1) the use of a multiple-wavelength encoding scheme to increase processing parallelism and (2) multiple-comparand word- and bit-parallel comparison with an execution time that is independent of the data or word size.     

New serotonin 5-HT(6) ligands from common feature pharmacophore hypotheses

Serotonin 5-HT6 receptor antagonists are thought to play an important role in the treatment of psychiatry, Alzheimer's disease, and probably obesity. To find novel and potent 5-HT6 antagonists and to provide a new idea for drug design, we used a ligand-based pharmacophore to perform the virtual screening of a commercially available database. A three-dimensional common feature pharmacophore model was developed by using the HipHop program provided in Catalyst software and was used as a query for screening the database. A recursive partitioning (RP) model which can separate active and inactive compounds was used as a filtering system. Finally a sequential virtual screening procedure (SQSP) was conducted, wherein both the common feature pharmacophore and the RP model were used in succession to improve the results. Some of the hits were selected based on druglikeness, ADME properties, structural diversity, and synthetic accessibility for real biological evaluation. The best hit compound showed a significant IC50 value of 9.6 nM and can be used as a lead for further drug development.     

Improved Optimum Radius for Robust Stability of Schur Polynomials

An approach based on the Rouché theorem was introduced in the literature to compute the optimum radius for robust stability of Schur polynomials. Later an attempt was made to improve the result, but it was shown to be incorrect. The purpose of this note is to show that an improved optimum radius still can be obtained by modifying the proposed method. The result of this note can be easily extended to the multidimensional cases.     

Two-dimensional fluorescence difference gel electrophoresis for comparison of affinity and non-affinity based downstream processing of recombinant monoclonal antibody

Although Staphylococcus Protein A (SpA) affinity chromatography is the state of the art capture step for antibody purification, non-affinity methods are more economical. We used two-dimensional fluorescence difference gel electrophoresis (2-D DIGE) to evaluate the purification of a recombinant IgG₁ antibody from cultured cells, with two different processes: (1) SpA capture followed by cation-exchange chromatography (CEX); and (2) CEX capture, followed by anion exchanger, then hydrophobic interaction chromatography. Efficiencies were similar in sodium dodecylsulphate polyacrylamide gel electrophoresis and size-exclusion chromatography; however, 2-D DIGE revealed higher efficiency with SpA than with CEX capture. Thus, 2-D DIGE is a valuable tool for downstream process development.     

Quantitative analysis of human serum leptin using a nanoarray protein chip based on single-molecule sandwich immunoassay

We report a method for the quantitative analysis of human serum leptin, which is a protein hormone associated with obesity, using a nanoarray protein chip based on a single-molecule sandwich immunoassay. The nanoarray patterning of a biotin-probe with a spot diameter of 150 nm on a self-assembled monolayer functionalized by MPTMS on a glass substrate was successfully accomplished using atomic force microscopy (AFM)-based dip-pen nanolithography (DPN). Unlabeled leptin protein molecules in human serum were detected based on the sandwich fluorescence immunoassay by total internal reflection fluorescence microscopy (TIRFM). The linear regression equation for leptin in the range of 100 zM-400 aM was determined to be y = 456.35x + 80,382 (R = 0.9901). The accuracy and sensitivity of the chip assay were clinically validated by comparing the leptin level in adult serum obtained by this method with those measured using the enzyme-linked immunosorbent assay (ELISA) performed with the same leptin standards and serum samples. In contrast to conventional ELISA techniques, the proposed chip methodology exhibited the advantages of ultra-sensitivity, a smaller sample volume and faster analysis time.     

Biomodification of coal to remove mercury

A biological process for removal of mercury from coal is under investigation. Iron and sulfur oxidizing bacteria have previously been used for desulfurization of coal and for mineral mining. We have shown that removal of mercury from coal is also possible via the same principles. Two pure cultures, Leptospirillum ferrooxidans and Acidithiobacillus ferrooxidans and four environmental consortium samples obtained from an acid mine drainage site were studied for mercury removal from coal. Four different coal samples were included in the study and the preliminary results have shown that up to 20% of the mercury can be removed in batch cultures compared to control. Additional parameters such as media composition and inoculum size were also studied. This is the first report demonstrating successful leaching of mercury from coal using biological treatment.     

Research on the Longitudinal Section of River Restoration Using Probabilistic Theory

Since the 1960s, many rivers have been destroyed as a consequence of the process of rapid urbanization. As accurate figures are important to repair rivers, there have been many research reports on methods to obtain the exact river slope and elevation. Until now, many research efforts have analyzed the river using measured river topographic factors, but when the flow velocity changes rapidly, such as during a flood, surveying is not easy; and due to cost, frequent measurements are difficult. Previous research has focused on the cross section of the river, so the information on the river longitudinal profile is insufficient. In this research, using informational entropy theory, equations are presented that can calculate the average river slope, river slope, and river longitudinal elevation for a river basin in real time. The applicability was analyzed through a comparison with the measured data of river characteristic factors obtained from the river plan. The parameters were calculated using informational entropy theory and nonlinear regression analysis using actual data, and then the longitudinal elevation entropy equation for each river and the average river slope were calculated. As a result of analyzing the applicability of the equations presented in this study by R² and Root Mean Square Error, all R² values were over 0.80, while RMSE values were analyzed to be between 0.54 and 2.79. Valid results can be obtained by calculating river characteristic factors.     

Chromatographic analyses of tocopherols and tocotrienols in palm oil

Analyses of tocols (tocopherols and tocotrienols) in palm oil have been extensively reported in the past. However, due to the scarcity of individual tocotrienol standards, calibrations have mostly been carried out using only α-tocopherol as standard. Moreover, even if the individual tocotrienols are being used, their reliability is often questioned, because tocotrienols are highly susceptible to oxidation and deterioration. This paper reports on the study of the deterioration rate of individual tocotrienol standards upon storage as well as different calibration methods for the tocols in palm oil.