Detecting Alzheimer's disease biomarkers: From antibodies to new bio-mimetic receptors and their application to established and emerging bioanalytical platforms – A critical review

The failure of therapeutic treatment of Alzheimer's disease (AD) patients can be related to the late onset of symptoms and, consequently, to a delayed pharmacological aid to counteract neurodegenerative progression. This is coupled to the fact that the diagnosis based on clinical criteria alone introduces high misdiagnosis rate. The availability of assessed biomarkers is therefore of crucial importance not only to counteract late diagnosis, but also to manage patients at high risk of AD development eligible for novel therapies. At the present time, amyloid-β peptides (Aβ_1-40 and Aβ_1-42 isoforms), alone or in combination with Tau protein (total and phosphorylated forms (p-tau)) constitute reliable AD biomarkers and result highly predictive of progression to AD dementia in patients with mild cognitive impairment (MCI), the earliest clinical presentation of AD. Improvement of existing diagnostic tools must take advantage of innovative bioanalytical approaches. In this review, starting from commercially available diagnostic platforms based on antibodies as recognition elements, we intended to provide a double point of view on the issue: 1) progresses achieved on innovative bioanalytical platforms (mainly sensors and biosensors) by using antibodies as consolidated receptors; 2) advance on promising bio-mimetic receptors alternative to antibodies in AD research, and their applications on conventional or innovative analytical platforms. In particular, we first focused on optical- (Propagating and Localized Surface Plasmon Resonance, named here SPR and LSPR) and electrochemical (voltammetric and impedimetric) transduction principles. Together with bioanalytical assays for AD biomarkers quantification, works aimed to investigate and understand their behavior, characteristics, and roles will also be considered in the discussion.     

Protein-resistant surfaces through mild dopamine surface functionalization

The synthesis and evaluation of new dopamine-based catechol anchors coupled to poly(ethylene glycol) (PEG) for surface modification of TiO(2) are reported. Dopamine is modified by dimethylamine-methylene (7) or trimethylammonium-methylene (8) groups, and the preparation of mPEG-Glu didopamine polymer 11 is presented. All these PEG polymers allow stable adlayers on TiO(2) to be generated through mild dip-and-rinse procedures, as evaluated both by variable angle spectroscopic ellipsometry and X-ray photoelectron spectroscopy. The resulting surfaces substantially reduced protein adsorption upon exposure to full human serum.     

New isosteres of (R)-2-methylhomoserine and (R)-2-methylaspartic acid by alkylation of a chiral imine leading stereoselectively to a quaternary stereogenic center

Imines obtained from either chiral 3-amino-4-silyloxymethylpyrrolidin-2-one 5a or 5b underwent alkylation to give, in good yield and total stereoselection, the corresponding 3,3,4-trisubstituted pyrrolidin-2-ones 8a–d where both the amino and the silyloxymethyl groups lie cis to each other, as shown by ¹H NMR spectroscopic data and NOE experiments. By removal of both the imino group and the chiral inducer from 8b, the pyrrolidin-2-one 12, an isostere of (R)-2-methylhomoserine 2 and the pyrrolidin-2-one 14, an isostere of (R)-2-methylaspartic acid 4 were obtained straightforwardly.     

Structure and reactivity of pyridine crystal under pressure

In this work we have performed an extensive high pressure study of the condensed phases of pyridine by Raman and IR spectroscopy. We have evidenced three different polymorphs, two crystalline, and one glassy and established the pressure conditions in which they exist as stable or metastable phases by several compression/decompression experiments both on annealed and not annealed samples. Crystallization and phase transitions are found to be kinetically driven. The vibrational spectra are extremely complex due to the low symmetry of the crystals, which implies a large number of crystal components. This complexity required a careful analysis of both IR and Raman data that led to the identification of 20 out of 21 external modes expected for phase II. We did not find any conclusive indication of phase transitions on compressing phase II thus indicating that phase II is likely the stable phase at the onset pressure of the chemical transformation of pyridine. The latter starts at 18 GPa and relevant differences from the well characterized benzene reaction suggest that it is likely driven by crystal defects.     

Basicity and coordination properties of a new phenanthroline-based bis-macrocyclic receptor

The synthesis and characterisation of the new macrocyclic ligand 6-methyl-2,6,10-triaza-[11]-12,25-phenathrolinophane (L1), which contains a triamine aliphatic chain linking the 2,9 positions of 1,10-phenanthroline and of its derivative L2, composed by two L1 moieties connected by an ethylenic bridge, are reported. Their basicity and coordination properties toward Cu(II), Zn(II), Cd(II), Pb(II) and Hg(II) have been studied by means of potentiometric and spectroscopic (UV-Vis, fluorescence emission) measurements in aqueous solutions. L1 forms 1:1 metal complexes in aqueous solutions, while L2 can give both mono- and dinuclear complexes. In the mononuclear L2 complexes the metal is sandwiched between the two cyclic moieties. The metal complexes with L1 and L2 do not display fluorescence emission, due to the presence of amine groups not involved in metal coordination. These amine groups can quench the excited fluorophore through an electron transfer process. The ability of the Zn(II) complexes with L1 and L2 to cleave the phosphate ester bond in the presence has been investigated by using bis(p-nitrophenyl)phosphate (BNPP) as substrate. The dinuclear complex with L2 shows a remarkable hydrolytic activity, due to the simultaneous presence within this complex of two metals and two hydrophobic units. In fact, the two Zn(II) act cooperatively in substrate binding, probably through a bridging interaction of the phosphate ester; the interaction is further reinforced by pi-stacking pairing and hydrophobic interactions between the phenanthroline unit(s) and the p-nitrophenyl groups of BNPP.     

Ammonolysis of morpholine‐2,5‐diones: participation of the primary amide group. Part 2

The ammonolysis of three morpholine‐2,5‐dione derivatives was investigated and the mechanism ascertained by kinetic studies and theoretical calculations. The kinetics, followed by high‐performance liquid chromatography analysis, evidenced the presence of two intermediates, which were isolated and characterized. The ammonolysis occurs with a complex mechanism involving two consecutive reactions followed by two parallel ones. The second step of the whole reaction involves an anchimeric assistance of the primary amide group. The pseudo‐first‐order rate constants were calculated by appropriate equations, which describe the single steps of the process. Computational density functional theory investigations of vicinal primary amide group participation were performed using a model compound, and the transition states were generated. The theoretical calculations evidenced the essential role exerted by ammonia, which acts as a proton transfer. Copyright © 2011 John Wiley & Sons, Ltd.     

Consistency of the intensional level of the Minimalist Foundation with Church’s thesis and axiom of choice

Consistency with the formal Church’s thesis, for short CT, and the axiom of choice, for short AC, was one of the requirements asked to be satisfied by the intensional level of a two-level foundation for constructive mathematics as proposed by Maietti and Sambin (in Crosilla, Schuster (eds) From sets and types to topology and analysis: practicable foundations for constructive mathematics, Oxford University Press, Oxford, 2005). Here we show that this is the case for the intensional level of the two-level Minimalist Foundation, for short MF, completed in 2009 by the second author. The intensional level of MF consists of an intensional type theory à la Martin-Löf, called mTT. The consistency of mTT with CT and AC is obtained by showing the consistency with the formal Church’s thesis of a fragment of intensional Martin-Löf’s type theory, called \(\mathbf{MLtt}_1\), where mTT can be easily interpreted. Then to show the consistency of \(\mathbf{MLtt}_1\) with CT we interpret it within Feferman’s predicative theory of non-iterative fixpoints \(\widehat{ID_1}\) by extending the well known Kleene’s realizability semantics of intuitionistic arithmetics so that CT is trivially validated. More in detail the fragment \(\mathbf{MLtt}_1\) we interpret consists of first order intensional Martin-Löf’s type theory with one universe and with explicit substitution rules in place of usual equality rules preserving type constructors (hence without the so called \(\xi \)-rule which is not valid in our realizability semantics). A key difficulty encountered in our interpretation was to use the right interpretation of lambda abstraction in the applicative structure of natural numbers in order to model all the equality rules of \(\mathbf{MLtt}_1\) correctly. In particular the universe of \(\mathbf{MLtt}_1\) is modelled by means of \(\widehat{ID_1}\)-fixpoints following a technique due first to Aczel and used by Feferman and Beeson.     

Synthesis of double core chromophore-functionalized nanothreads by compressing azobenzene in a diamond anvil cell

Carbon nanothreads are likely the most attracting new materials produced under high pressure conditions. Their synthesis is achieved by compressing crystals of different small aromatic molecules, while also exploiting the applied anisotropic stress to favor nontopochemical paths. The threads are nanometric hollow structures of saturated carbon atoms, reminiscent of the starting aromatic molecule, gathered in micron sized bundles. The examples collected so far suggest that their formation can be a general phenomenon, thus enabling the design of functionalities and properties by suitably choosing the starting monomer on the basis of its chemical properties and crystal arrangement. The presence of heteroatoms or unsaturation within the thread is appealing for improving the processability and tuning the electronic properties. Suitable simple chromophores can fulfill these requirements and their controlled insertion along the thread would represent a considerable step forward in tailoring the optical and electronic properties of these mechanically extraordinary materials. Here, we report the synthesis and extensive characterization of double core nanothreads linked by azo groups. This is achieved by compressing azobenzene in a diamond anvil cell, the archetype of a wide class of dyes, and represents a fundamental step in the realization of nanothreads with tailored photochemical and photophysical properties.

One-step high-pressure synthesis of 2D crystalline double nanothreads linked by azo groups.     

Stereodivergent <Emphasis Type="Italic">Baylis-Hillman</Emphasis> Reaction of a Chiral Acryloyl Imide Exploiting Ion-Chelation Effect: Mechanistic Insight on the Rearrangement of Trichloroacetimidates of the <Emphasis Type="Italic">Baylis-Hillman</Emphasis> Adducts to Trichloroacetamides

Summary. In the presence of DABCO, ethyl glyoxalate and (4S,5R)-1,5-dimethyl-3-acryloyl-4-phenylimidazolidin-2-one gave mixtures of the corresponding Baylis-Hillman adducts enriched in either isomer, depending on the absence or the presence of LiClO₄ in the reaction mixture. A diastereomeric mixture in 10:90 dr allowed to definitively establish the mechanism of the reaction leading to trichloroacetamides starting from trichloroacetimidates of the Baylis-Hillman adducts.     

Stereoselective iodocyclisation of 3-acylamino-2-methylene alkanoates: a computational insight

In order to explain the high stereocontrol occurring in the iodocyclisation of 3-acylamino-2-methylenealkanoates, either the conformational space of the starting products or the cyclisation reaction potential energy surface (PES) was explored at DFT level of theory, the polarised continuum formalism (PCM) for chloroform being used in order to consider the solvent effect. The observed stereoselection was ascribed to both the near attack conformations (NACs) distribution and the energy differences between the two possible and competitive cyclisation pathways leading to cis- and trans-diastereomers.