X-ray Structural Analysis of Tetramethylammonium Fluorochromate(VI). A Link between Reactivity and the Extent of Symmetry

The crystal and molecular structure of tetramethylammonium fluorochromate(VI), (CH₃)₄N[CrO₃F] has been determined at 130(2) K by X-ray diffraction. X-ray data clearly demonstrate inequality between the Cr–O and the Cr–F bonds that is responsible for the higher reactivity of this compound over similar oxidizing agents in terms of the amount of oxidant and solvent required, short reaction times and high yields. The reason for this inequality is due to the CH· · ·F hydrogen bond that forms between the methyl hydrogen of the cation and the fluoride atom of the anion. The IR spectrum and hydrogen bonding of this compound is similar to the tetramethylammonium perchlorate salt and shows the existence of hydrogen bonding.     

Vitamin C functionalized multi-walled carbon nanotubes and its reinforcement on poly(ester-imide) nanocomposites containing L-isoleucine amino acid moiety

The aim of this research was to prepare poly(ester–imide) (PEI)-based nanocomposites (NCs) through the functionalization of carboxylated-multiwalled carbon nanotubes (MWCNT)s with ascorbic acid, in order to ensure better filler dispersion and good interfacial adhesion between filler and matrix. Chiral and biodegradable PEI was synthesized from amino acid-based diacid with 4,4′-thiobis(2-tert-butyl-5-methylphenol) by a direct polycondensation method. Using the solution mixing technique, the NCs containing modified MWCNTs with different loading levels of 5,10, 15 wt% were produced and examined in terms of chemical structure, morphology, and thermal stability by FT-IR spectroscopy, thermogravimetric analysis (TGA), X-ray diffraction, transmission electron microscopy (TEM), and field emission scanning electron microscopy (FE-SEM). TEM and FE-SEM photographs of the obtained NCs indicated well-dispersed morphologies and strong interaction between the functionalized MWCNTs and the polymer matrix. TGA results revealed that the addition of MWCNT resulted in a significant increase of the thermal stability and char yields of the NCs compared to those of the neat PEI.     

Full polysaccharide chitosan‐CMC membrane and silver nanocomposite: synthesis,characterization, and antibacterial behaviors

Chitosan‐carboxymethyl cellulose (CMC) full polysaccharide membrane was prepared by cross‐linking of chitosan with CMC dialdehyde and subsequent reductive amination. CMC dialdehyde molecule was prepared by periodate oxidation of CMC and then applied as a cross‐linking agent to form a new membrane network. The properties of oxidized CMC were investigated by various methods such as Fourier transform infrared (FT‐IR) spectroscopy, ¹H NMR spectroscopy, and viscosity test. Then, novel chitosan‐CMC silver nanocomposite was prepared using chitosan‐CMC as a carrier. The structure of the chitosan‐CMC membrane and the silver nanocomposite were confirmed by FT‐IR spectroscopy, scanning electron microscopy (SEM), transmission electron microscopy (TEM), and thermogravimetric analysis (TGA). TEM images indicate that the chitosan‐CMC nanocomposite comprises silver nanoparticles with diameters in the range of about 5–20 nm. The antibacterial studies of the nanocomposite were also evaluated. The chitosan‐CMC silver nanocomposite demonstrates good antibacterial activity against Staphylococcus aureus, Pseudomonas aeruginosa, and Escherichia coli. Copyright © 2016 John Wiley & Sons, Ltd.     

Ion Mobility Spectrometry-Hydrogen Deuterium Exchange Mass Spectrometry of Anions: Part 2. Assessing Charge Site Location and Isotope Scrambling

Ion mobility spectrometry (IMS) coupled with gas-phase hydrogen deuterium exchange (HDX)-mass spectrometry (MS) and molecular dynamic simulations (MDS) has been used for structural investigation of anions produced by electrospraying a sample containing a synthetic peptide having the sequence KKDDDDDIIKIIK. In these experiments the potential of the analytical method for locating charge sites on ions as well as for utilizing collision-induced dissociation (CID) to reveal the degree of deuterium uptake within specific amino acid residues has been assessed. For diffuse (i.e., more elongated) [M – 2H]^2– ions, decreased deuterium content along with MDS data suggest that the D4 and D6 residues are charge sites, whereas for the more diffuse [M – 3H]^3– ions, the data suggest that the D4, D7, and the C-terminus are deprotonated. Fragmentation of mobility-selected, diffuse [M – 2H]^2– ions to determine deuterium uptake at individual amino acid residues reveals a degree of deuterium retention at incorporation sites. Although the diffuse [M – 3H]^3– ions may show more HD scrambling, it is not possible to clearly distinguish HD scrambling from the expected deuterium uptake based on a hydrogen accessibility model. The capability of the IMS-HDX-MS/MS approach to provide relevant details about ion structure is discussed. Additionally, the ability to extend the approach for locating protonation sites on positively-charged ions is presented.

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Graphical Abstract ?

     

Structure–property relationships of low dielectric constant,nanoporous, thermally stable polyimides via grafting of poly(propylene glycol) oligomers

Synthesis of high temperature polyimide foams with pore sizes in the nanometer range was developed. Foams were prepared by casting graft copolymers comprising a thermally stable block as the matrix and a thermally labile material as the dispersed phase. The copolyimides as the matrix material were prepared via polycondensation reactions of pyromellitic dianhydride with three new diamines (4BAP, 3BAP, and BAN) through the poly(amic acid) precursors. Functionalized poly(propylene glycol) (PPGBr‐1000 and PPGBr‐2500) as the labile oligomer was prepared via reaction of poly(propylene glycol) monobutyl ether with 2‐bromoacetyl bromide. Graft copolymers were prepared by the reaction of the poly(amic acid)s with these thermally labile constituents. Upon thermal treatment the labile blocks were subsequently removed leaving pores with the size and shape of the original copolymer morphology. The polyimides and foamed polyimides were characterized by some conventional methods including FTIR, H‐NMR, DSC, TGA, SEM, TEM, and dielectric constant. The average pore size of the polyimide nanofoams was in the range of 5–20 nm. The structure–property relationships of the prepared nanofoams were investigated based on the diamine structures and also molecular weights of labile groups. Copyright © 2008 John Wiley & Sons, Ltd.     

Identification and characterization of smallest pore-forming protein in the cell wall of pathogenic <Emphasis Type="Italic">Corynebacterium urealyticum</Emphasis> DSM 7109

Background

Corynebacterium urealyticum, a pathogenic, multidrug resistant member of the mycolata, is known as causative agent of urinary tract infections although it is a bacterium of the skin flora. This pathogenic bacterium shares with the mycolata the property of having an unusual cell envelope composition and architecture, typical for the genus Corynebacterium. The cell wall of members of the mycolata contains channel-forming proteins for the uptake of solutes.

Results

In this study, we provide novel information on the identification and characterization of a pore-forming protein in the cell wall of C. urealyticum DSM 7109. Detergent extracts of whole C. urealyticum cultures formed in lipid bilayer membranes slightly cation-selective pores with a single-channel conductance of 1.75 nS in 1 M KCl. Experiments with different salts and non-electrolytes suggested that the cell wall pore of C. urealyticum is wide and water-filled and has a diameter of about 1.8 nm. Molecular modelling and dynamics has been performed to obtain a model of the pore. For the search of the gene coding for the cell wall pore of C. urealyticum we looked in the known genome of C. urealyticum for a similar chromosomal localization of the porin gene to known porH and porA genes of other Corynebacterium strains. Three genes are located between the genes coding for GroEL2 and polyphosphate kinase (PKK2). Two of the genes (cur_1714 and cur_1715) were expressed in different constructs in C. glutamicum ΔporAΔporH and in porin-deficient BL21 DE3 Omp8 E. coli strains. The results suggested that the gene cur_1714 codes alone for the cell wall channel. The cell wall porin of C. urealyticum termed PorACur was purified to homogeneity using different biochemical methods and had an apparent molecular mass of about 4 kDa on tricine-containing sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE).

Conclusions

Biophysical characterization of the purified protein (PorACur) suggested indeed that cur_1714 is the gene coding for the pore-forming protein in C. urealyticum because the protein formed in lipid bilayer experiments the same pores as the detergent extract of whole cells. The study is the first report of a cell wall channel in the pathogenic C. urealyticum.

     

Effect of IAPP on the proteome of cultured Rin-5F cells

Background

Islet amyloid polypeptide (IAPP) or amylin deposits can be found in the islets of type 2 diabetes patients. The peptide is suggested to be involved in the etiology of the disease through formation of amyloid deposits and destruction of β islet cells, though the underlying molecular events leading from IAPP deposition to β cell death are still largely unknown.

Results

We used OFFGEL? proteomics to study how IAPP exposure affects the proteome of rat pancreatic insulinoma Rin-5F cells. The OFFGEL? methodology is highly effective at generating quantitative data on hundreds of proteins affected by IAPP, with its accuracy confirmed by In Cell Western and Quantitative Real Time PCR results. Combining data on individual proteins identifies pathways and protein complexes affected by IAPP. IAPP disrupts protein synthesis and degradation, and induces oxidative stress. It causes decreases in protein transport and localization. IAPP disrupts the regulation of ubiquitin-dependent protein degradation and increases catabolic processes. IAPP causes decreases in protein transport and localization, and affects the cytoskeleton, DNA repair and oxidative stress.

Conclusions

Results are consistent with a model where IAPP aggregates overwhelm the ability of a cell to degrade proteins via the ubiquitin system. Ultimately this leads to apoptosis. IAPP aggregates may be also toxic to the cell by causing oxidative stress, leading to DNA damage or by decreasing protein transport. The reversal of any of these effects, perhaps by targeting proteins which alter in response to IAPP, may be beneficial for type II diabetes.

     

Green synthesis of silver nanoparticles using water extract of Salvia leriifolia: Antibacterial studies and applications as catalysts in the electrochemical detection of nitrite

Here, a green method is described for the biosynthesis of Ag nanoparticles (Ag NPs) using aqueous extracts of the leaf of Salvia leriifolia as reducing and stabilizing agent. Various techniques such as scanning electron microscopy (SEM), atomic force microscopy (AFM), transmission electron microscopy (TEM) and X‐ray diffraction (XRD) were employed for the characterization of the structure and morphology of bio‐synthesized AgNPs. The results reveal that AgNPs synthesized with uniform spherical morphology and average diameters of 27 nm. The AgNPs as a green and efficient heterogeneous catalyst presented superior antibacterial activity. Direct electrochemistry studies of the synthesized AgNPs confirmed that nanoparticles retained their direct electrochemical activity. This is mainly attributed to the proper biosynthesis process, the large specific surface area and the good conductivity of the synthesized nanoparticles. Hence, the present synthesized AgNPs displayed good electrocatalytic activity to the reduction of nitrite ions. The proposed method is highly recommended as a novel platform for the development of electrochemical sensors which can further expand the applications of AgNPs. Antibacterial activity of the synthesized AgNPs was evaluated against nine microorganisms. AgNPs prevented the growth of all selected bacteria. The nanoparticles inhibited the growth of Pseudomonas aeruginosa, Klebsiella pneumonia, Staphylococcus coagulase, Acinetobacter baumannii, and Streptococcus pneumonia more than antibiotic of vancomycin, however, the ability of AgNPs against Echerishia coli and Serratia marcescens was less than the antibiotic. On the other hand AgNPs were active against Citrobacter frurdii, while the antibiotic was inactive.