EPR studies of Gd3+-doped Ce2(SO4)3.8H2O and La2(SO4)3.9H2O single crystals

EPR spectra of Gd³⁺-doped Ce₂(SO₄)₃.8H₂O and La₂(SO₄)₃.9H₂O single crystals have been measured with an X-band spectrometer at room and low temperatures. The absolute signs of spin Hamiltonian parameters have been determined for the La₂(SO₄)₃.9H₂O host from intensities of lines at liquid helium temperature; for the Ce₂(SO₄).8H₂O host the lines broaden considerably below 60 K, not permitting the determination of absolute signs of spin Hamiltonian parameters. The data are analysed using a rigourous least-squares procedure, fitting simultaneously all lines obtained for several orientations of the external magnetic field. The zero-field splittings have been computed for both the hosts. The characteristics of EPR spectra of Gd³⁺ in these hosts are compared with those obtained in other rare-earth trisulphate octahydrate hosts.     

Behaviour of LiF:Mg,Cu,P and LiF:Mg,Ti thermoluminescent detectors for electron doses up to 1 MGy

The behaviour of LiF:Mg,Cu,P and LiF:Mg,Ti detectors at ultra-high doses up to 1 MGy, has been investigated. The presence of the ultra-high-temperature peak (450 °C) of reproducible properties was observed in various batches of LiF:Mg,Cu,P, confirming earlier findings. The results indicate that this peak is not an effect of random impurities nor intrinsic effects of LiF, but it is rather connected with the doping.A parameter called ultra-high temperature ratio (UHTR) was defined in order to quantify the observed changes of LiF:Mg,Cu,P glow-curve shape at very high doses and very high temperatures. The use of this parameter allows to determine an absorbed dose in the range from 1 kGy to 1 MGy. This new method of high-dose dosimetry makes LiF:Mg,Cu,P a unique dosimeter, which is capable to cover at least 12 orders of magnitude of dose range: from a microgray to a megagray.     

Quantum Hall ferrimagnetism in lateral quantum dot molecules

We demonstrate the existence of ferrimagnetic and ferromagnetic phases in a spin phase diagram of coupled lateral quantum dot molecules in the quantum Hall regime. The spin phase diagram is determined from the Hartree-Fock configuration interaction method as a function of electron number N and magnetic field B. The quantum Hall ferrimagnetic phase corresponds to spatially imbalanced spin droplets resulting from strong interdot coupling of identical dots. The quantum Hall ferromagnetic phases correspond to ferromagnetic coupling of spin polarization at filling factors between nu=2 and nu=1.     

Size-expanded yDNA bases: an ab initio study

xDNA and yDNA are new classes of synthetic nucleic acids characterized by having base-pairs with one of the bases larger than the natural congeners. Here these larger bases are called x- and y-bases. We recently investigated and reported the structural and electronic properties of the x-bases (Fuentes-Cabrera et al. J. Phys. Chem. B 2005, 109, 21135-21139). Here we extend this study by investigating the structure and electronic properties of the y-bases. These studies are framed within our interest that xDNA and yDNA could function as nanowires, for they could have smaller HOMO-LUMO gaps than natural DNA. The limited amount of experimental structural data in these synthetic duplexes makes it necessary to first understand smaller models and, subsequently, to use that information to build larger models. In this paper, we report the results on the chemical and electronic structure of the y-bases. In particular, we predict that the y-bases have smaller HOMO-LUMO gaps than their natural congeners, which is an encouraging result for it indicates that yDNA could have a smaller HOMO-LUMO gap than natural DNA. Also, we predict that the y-bases are less planar than the natural ones. Particularly interesting are our results corresponding to yG. Our studies show that yG is unstable because it is less aromatic and has a Coulombic repulsion that involves the amino group, as compared with a more stable tautomer. However, yG has a very small HOMO-LUMO gap, the smallest of all the size-expanded bases we have considered. The results of this study provide useful information that may allow the synthesis of an yG-mimic that is stable and has a small HOMO-LUMO gap.     

Theoretical analysis of the structural and electronic properties of metalloporphyrin pi-cation radicals

A method for analyzing the A(1u)/A(2u) contents of metalloporphyrin pi-cation radicals is developed and applied to a series of unsubstituted planar metalloporphines (MPs) (M=Cr, Mn, Fe, Co, Ni, Cu, and Zn). The structures and electronic properties of the MPs and their cation radicals were calculated by density functional theory (DFT) and subsequently analyzed. It was found that the MPs with small core sizes have a tendency to form A(1u)-type radicals, while the MPs with large core size have a preference for an A(2u)-type. Neither of these pure-state species, however, is stable under the D(4)(h) symmetry, and both radical cation types are subject to pseudo-Jahn-Teller (pJT) distortion. The pJT distortion leads to structures with lower symmetry and states that have mixed character with respect to the A(1u) and A(2u) components. The degree of mixing could be estimated by employing orbital projection technique or a complementary spin density decomposition. Both techniques produce very similar results, pointing out that the frontier orbital, which becomes empty upon electron removal, plays a critical role in determining electronic properties.     

On the efficiency of bile salt for stable suspension and isolation of single-walled carbon nanotubes—spectroscopic and microscopic investigations

In this contribution we present a systematic study on the dispersion of SWCNTs in a water-based solution of biocompatible detergent: sodium deoxycholate (DOC). By avoiding harsh chemical conditions, which are known to damage nanotubes structure, a stable SWCNTs suspension was created. Long term stirring of the solution led to preparation of a stable transparent solution, containing well-dispersed isolated SWCNTs. The as-prepared dispersion remained stable and clear for two months. Optical absorption spectroscopy was employed to measure SWCNTs suspension stability. Nanotube aggregation was evaluated through the tangential mode (G mode) present in the Raman spectrum. High-resolution transmission electron microscopy was employed to observe the mechanism of debundling process.     

Graph algorithms for DNA sequencing – origins,current models and the future

With the ubiquitous presence of next-generation sequencing in modern biological, genetic, pharmaceutical and medical research, not everyone pays attention to the underlying computational methods. Even fewer researchers know what were the origins of the current models for DNA assembly. We present original graph models used in DNA sequencing by hybridization, discuss their properties and connections between them. We also explain how these graph models evolved to adapt to the characteristics of next-generation sequencing. Moreover, we present a practical comparison of state-of-the-art DNA de novo assembly tools representing these transformed models, i.e. overlap and decomposition-based graphs. Even though the competition is tough, some assemblers perform better and certainly large differences may be observed in hardware resources utilization. Finally, we outline the most important trends in the sequencing field, and try to predict their impact on the computational models in the future.     

Regular Boundary Points and Exit Distributions for Parabolic Differential Operators

We show that the regularity of a boundary point for a parabolic differential operator in divergence form is under some geometric assumptions equivalent to the property that the density of the exit distribution for a time reversed process vanishes at that point. We give regularity and irregularity criterions for equations with variable coefficients. Thus, the known result on the Fulks measure that states that the density with respect to the Lebesgue measure vanishes at the point opposite to the center of the heat ball (see Fulks (Proc. Am. Math. Soc. 17, 6–11 1966)) can be extended to exit distributions for more general regions and parabolic differential operators.     

Relaxation and decoherence of orbital and spin degrees of freedom in quantum dots

The phonon induced mechanisms of relaxation/decoherence in quantum dots are analysed. A non-perturbative technique - a modification of the Davydov transformation appropriate to the localised particles is applied for solving the electron-phonon eigenvalue problem in a quantum dot at magnetic field presence. The decay rates for polaron relaxation via the anharmonicity induced channel are analysed in details. In particular, it is indicated that previous, of perturbative type, estimations of the anharminicity induced relaxation rates were too severe and after including the coherence effects they are of, at least, one order longer. The process of exciton dressing with phonons is also analysed as the unavoidable source of picosecond scale decoherence in optically driven nanostructures. A break-down of an instant Pauli spin blocking mechanism and a large enhancement of the Fröhlich constant for confined electrons are also addressed.