Characterisation and Classification of Foodborne Bacteria Using Reflectance FTIR Microscopic Imaging

This work investigates the application of reflectance Fourier transform infrared (FTIR) microscopic imaging for rapid, and non-invasive detection and classification between Bacillus subtilis and Escherichia coli cell suspensions dried onto metallic substrates (stainless steel (STS) and aluminium (Al) slides) in the optical density (OD) concentration range of 0.001 to 10. Results showed that reflectance FTIR of samples with OD lower than 0.1 did not present an acceptable spectral signal to enable classification. Two modelling strategies were devised to evaluate model performance, transferability and consistency among concentration levels. Modelling strategy 1 involves training the model with half of the sample set, consisting of all concentrations, and applying it to the remaining half. Using this approach, for the STS substrate, the best model was achieved using support vector machine (SVM) classification, providing an accuracy of 96% and Matthews correlation coefficient (MCC) of 0.93 for the independent test set. For the Al substrate, the best SVM model produced an accuracy and MCC of 91% and 0.82, respectively. Furthermore, the aforementioned best model built from one substrate was transferred to predict the bacterial samples deposited on the other substrate. Results revealed an acceptable predictive ability when transferring the STS model to samples on Al (accuracy = 82%). However, the Al model could not be adapted to bacterial samples deposited on STS (accuracy = 57%). For modelling strategy 2, models were developed using one concentration level and tested on the other concentrations for each substrate. Results proved that models built from samples with moderate (1 OD) concentration can be adapted to other concentrations with good model generalization. Prediction maps revealed the heterogeneous distribution of biomolecules due to the coffee ring effect. This work demonstrated the feasibility of applying FTIR to characterise spectroscopic fingerprints of dry bacterial cells on substrates of relevance for food processing.     

Pyrazine‐2,3‐dicarboxamide

In the crystal structure of the title di­amide, C₆H₆N₄O₂, linear tapes of carbox­amide N—H?O and pyrazine C—H?N hydrogen‐bond dimers are connected by N—H?O bonds to form a staircase‐like pattern.     

The kinetics of the interaction of peroxy radicals. II. Primary and secondary alkyl peroxy

A chain mechanism is proposed to account for the very rapid termination reactions observed between alkyl peroxy radicals containing α-C—H bonds which are from 10⁴ to 10⁶ faster than the termination of tertiary alkyl peroxy radicals. The new mechanism is with termination by . \documentclass{article}\pagestyle{empty}\begin{document}$ {\rm R}\overline {{\rm CHOO}} $\end{document} is the zwitterion originally postulated by Criegee to account for the chemistry of O₃-olefin addition. Heats of formation are estimated for \documentclass{article}\pagestyle{empty}\begin{document}$ \overline {{\rm CH}_2 {\rm OO,}} {\rm }\overline {{\rm RCHOO}} $\end{document}, and \documentclass{article}\pagestyle{empty}\begin{document}$ ({\rm C}\overline {{\rm H}_3 )_2 {\rm COO}} $\end{document} and it is shown that all steps in the mechanism are exothermic. The second step can account for (¹Δ)O₂ which has been observed. k₁ is estimated to be 10^9–2/θ liter/M sec where θ = 2.303RT in kcal/mole. The second and third steps constitute a chain termination process where chain length is estimated at from 2 to 10. This mechanism for the first time accounts for minor products such as acid and ROOH found in termination reactions. Trioxide (step 3) is shown to be important below 30°C or in very short time observations (<10 s at 30°C). Solvent effects are also shown to be compatible with the new mechanism.     

Application of positron annihilation induced Auger Electron Spectroscopy to the study of surface chemistry

Positron annihilation induced Auger Electron Spectroscopy (PAES), makes use a beam of low energy positrons to excite Auger transitions by annihilating core electrons. This novel mechanism provides PAES with a number of unique features which distinguishes it from other methods of surface analysis. In PAES the very large collisionally induced secondary electron background which is present under the low energy Auger peaks using conventional tecniques can be eliminated by using a positron beam whose energy is below the range of Auger electron energies. In addition, PAES is more surface selective than conventional Auger Spectroscopy because the PAES signal originates almost exclusively from the topmost atomic layer due to the fact that the positrons annihilating with the core electrons are trapped in an image correlation well just outside the surface. In this paper, recent applications of Positron Annihilation Induced Auger Electron Spectroscopy (PAES) to the study of surface structure and surface chemistry will be discussed including studies of the growth, alloying and inter-diffusion of ultrathin layers of metals, metals on semiconductors, and semiconductors on semiconductors. In addition, the possibilities for future application of PAES to the study of catalysis and surface chemistry will be outlined.     

Concomitant polymorphs of 2,2',6,6'-tetramethyl-4,4'-terphenyldiol: the beta-quinol network reproduced in a metastable polymorph

The striking resemblance of the rhombohedral and monoclinic forms of the title molecule to beta- and gamma-quinol provides a crystal engineering approach to new polymorphic systems.     

Andrographolide: Solving Chemical Instability and Poor Solubility by Means of Cocrystals

The bioactive agent andrographolide was screened with pharmaceutically acceptable coformers to discover a novel solid form that will solve the chemical instability and poor solubility problems of this herbal medicine. Liquid‐assisted grinding of andrographolide with GRAS (generally regarded as safe) coformers in a fixed stoichiometry resulted in cocrystals with vanillin (1:1), vanillic acid (1:1), salicylic acid (1:1), resorcinol (1:1), and guaiacol (1:1). All the crystalline products were characterized by thermal, spectroscopic, and diffraction methods. Interestingly, even though the cocrystals are isostructural, their physicochemical properties are quite different. The andrographolide–salicylic acid cocrystal completely inhibited the chemical transformation of andrographolide to its inactive sulfate metabolite, and moreover, the cocrystal exhibited a dissolution rate that was three times faster and a drug release that was two times higher than pure andrographolide.     

Reaction rates and dissolution mechanisms of quartz as a function of pH

In this computational study, we present the dissolution rates for quartz as a function of pH at 298 K. At any given pH, the dissolution of the quartz surface depends on the distribution of protonated, deprotonated, or neutral species. The dissolution mechanism for each of these three species was investigated by ab initio electronic structure calculations to obtain the reaction profile. Using the barrier height along with the partition functions for the transition state and the reactants in the rate-limiting steps, we calculated the TST rate constants for the reactions for the temperature range of 200-500 K. At 298 K the rate constant (s-1) for the dissolution of neutral species was found to be several orders of magnitude smaller than the rate-limiting steps for the protonated and deprotonated species. The values of the rate constants were used in the rate law expression to calculate the overall dissolution rate (mol m-2 s-1) at a given pH. The calculated rates were compared to previously reported experimental and theoretical rates and were found to be in good agreement over 2-12 pH range.     

1,3‐dipolar cycloaddition reactions of 2‐substituted azomethine N‐oxides with N‐benzyl maleimides leading to the synthesis of stereoisomers

The azomethine N‐oxides ( 1 ) on reacting with N‐benzylmaleimide ( 2 ) provide a mixture of stereoisomers 2,3‐diphenyl‐5‐benzyl‐4H‐2,3,3a,5,6,6a‐hexahydropyrrolo[3,4‐d]isoxazole‐4,6–dione derivatives ( 3 ) in good yields. These isomers have been assigned cis and trans configurations ( 3‐A and 3‐B ) with respect to proton C₃‐H on the azomethinic carbon on the basis of their PMR and H‐NMR COSY data. The ratio between cis and trans isomers has been found to be dependent on substituents present at ortho position of C‐phenyl aldehydic moiety. The salient feature of these 1,3‐dipolar cycloaddition reactions lies in that the benzylic protons on N‐benzyl moiety suffer gem coupling, indicating magnetic nonequivalence. J. Heterocyclic Chem.,, (2012).