Selection of aptamers for a non-DNA binding protein in the context of cell lysate

Aptamer-facilitated Protein Isolation from Cells (AptaPIC) is a recently introduced method that allows, in particular, generation of aptamers for a protein target in a context of a crude cell lysate. The approach enables efficient, tag-free, affinity purification of target proteins which are not available in a pure form a priori, and for which no affinity ligands are available. In the proof-of-principle work, AptaPIC was used to develop aptamers for and purify MutS, a DNA mismatch repair protein. The DNA-binding nature of MutS raised concerns that AptaPIC was not a generic technique and could be inapplicable to protein targets that do not possess native nucleic acid-binding properties. Here we prove that these concerns are invalid. We used AptaPIC to generate pools of aptamers for human Platelet-Derived Growth Factor chain B (PDGF-B) protein, a non-DNA binding protein, in the context of a bacterial cell lysate, and subsequently purify it from the same lysate. Within a small number of rounds, the efficiencies of aptamer selection were similar in conventional Systematic Evolution of Ligands by Exponential Enrichment (SELEX) for pure protein and in AptaPIC for protein in the cell lysate. The conventional selection approach resulted in an aptamer pool with an EC(50) value of 2.0±0.1 μM, while the AptaPIC selection approach resulted in a pool with an EC(50) value of 3.9±0.4 μM. Our results clearly demonstrate that selection of aptamers for proteins in the cell lysate is not only realistic but also efficient.     

Natural Convection from a Vertical Plate in a Porous Medium Using Brinkman's Model

A regular perturbation analysis is presented for the following laminar natural convection flows of Newtonian fluids with temperature-dependent effective viscosity: a freely-rising plane plume, the flow above a horizontal line source on an adiabatic surface (a plane wall plume) and the flow adjacent to a vertical uniform flux surface for porous medium. The temperature-dependent effective viscosity introduces nonsimilarity into the governing equations. Numerical results are presented for the flow and heat transfer characteristics.     

Design and synthesis of new 2-substituted-5-[2-(2-halobenzyloxy)phenyl]-1,3,4-oxadiazoles as anticonvulsant agents

A new series of 2-substituted-5-[2-(2-halobenzyloxy)phenyl]-1,3,4-oxadiazoles was designed and synthesized as anticonvulsant agents. Electroshock and pentylenetetrazole-induced lethal convulsion tests showed that the introduction of an amino group at position 2 of 1,3,4-oxadiazole ring and a fluoro substituent at ortho position of benzyloxy moiety had the best anticonvulsant activity. Our results showed that this effect is mediated through benzodiazepine receptors mechanism.     

New Polymer Syntheses Part 60: A Facile Synthetic Route to Polyamides Based on Thieno[2,3-b]thiophene and Their Corrosion Inhibition Behavior

Polyamides containing thieno[2,3-b]thiophene moiety were prepared via a simple polycondensation reaction of the diaminothieno[2,3-b]thiophene monomer 1 a with different kinds of diacid chlorides(including oxalyl, adipoyl, sebacoyl, isophthaloyl,terephthaloyl, 4,4′-azodibenzoyl, 3,3′-azodibenzoyl, p-phenylene diacryloyl) in the presence of Li Cl and NMP as a solvent through lowtemperature solution polycondensation. The chemical structures of model compound and synthesized polyamides were confirmed by FTIR, nuclear magnetic resonance spectroscopy(including ~1H-NMR and ~(13)C-NMR) and elemental analysis. In addition, the thermal stability, crystallinity structure and surface morphology of synthesized polyamides were characterized via thermogravametric analysis(TGA), wide-angle X-ray diffraction analysis(WAXD) and scanning electron microscopy(SEM). Also, the corrosion inhibition behavior of selected examples of polyamides was investigated; the inhibitive effect of the investigated polymers for carbon steel in 1.0 mol·L~(-1) HCl was studied using potentiodynamic polarization(PDP) and electrochemical impedance spectroscopy(EIS) methods. PDP results displayed that the polyamides containing thieno[2,3-b]thiophene moiety can be as mixed-type inhibitors. The inhibition efficiency(P, %) was found to be in the range from 67.13% to 96.01%. There is an increase in P by the synthesized polymers in comparison to the starting monomer.The adsorption of these polymers was found to obey Langmuir adsorption isotherm.     

Preparation of immobilized hexamine on Fe3O4/SiO2 core/shell nanoparticles: a novel catalyst for solvent-free synthesis of bis(indolyl)methanes

Research on Chemical Intermediates - Hexamethylenetetramine covalently immobilized on silica-coated magnetic nanoparticles is prepared and characterized by XRD, FT-IR, SEM, and VSM. According to...     

New ent-kaurane diterpenoid dimer from Pulicaria inuloides

A new naturally occurring ent-kaurane diterpenoid dimer, 15β, 15′β-oxybis (ent-kaur-16-en-19-oic acid) (1) along with six known compounds, 15β-hydroxy-ent-kaur-16-en-19-oic acid (2), 15β-hydroxy-ent-kaur-16-en-19-oate-β-d-glucopyranoside (3), 6-hydroxykaempferol-3, 7-dimethyl ether (4), quercetagetin 3, 7, 3′-trimethyl ether (5), β-sitosterol (6) and β-sitosterol glucoside (daucosterol) (7) were isolated from the aerial parts of Pulicaria inuloides DC. Compounds 2–5 were isolated for the first time from genus Pulicaria. The structures of compounds 1–7 were established on the basis of extensive 1D and 2D NMR spectroscopic techniques in combination with ESI-MS. The antimicrobial activity of the isolated compounds was evaluated against Staphylococcus aureus, Escherichia coli and Candida albicans. Sulphorhodamine B cytotoxic assay against HepG2 (liver cancer) cell line and ABTS antioxidant assay were carried out.     

Can Polyethylene be a Photo(bio)Degradable Synthetic Polymer?

Abstract

A polymeric system based on LDPE would be qualified as a “photo(bio)degradable synthetic polymer” for use as films or thin systems in plasticulture and later in packaging where severe specific criteria should be respected. The evolution of such a system in environmental conditions should present three phases. In Phase I, corresponding to storage and use, in the presence of physicochemical and biological aggression, chemical evolution should be very limited and resistance to any microorganism should be observed. In Phase II a rapid abiotic degradation should occur until the complete destruction of physical (mechanical) properties and spontaneous fragmentation of the thin systems into more and more divided parts. Phase III corresponds to bioassimilation of heavily transformed (oxidized) solid particles. Phase I should be predicted and controlled on the basis of artificial photoaging or thermoaging experiments. Depending on the desired lifetime of the system, nonaccelerated, accelerated, or ultra-accelerated photoaging techniques could be used. The earliest fragmentation, which should be observed in Phase II, should be predicted within the same experiment. The prediction of the long-term fate of the polymeric materials should be based not only on the variations of physical properties but on a full analysis of the chemical evolution, i.e., determination of the major final transformed groups of the macromolecular chains (and especially the acidic end groups) and the molar mass distribution. In a recent BRITE-EURAM European contract, we developed an experimental protocol for the control of Phase III based on the use of pure cultures of strains from collections or selected adapted wild strains (from industrial polyethylene site dumpings) which had been examined. Abiotically oxidized LDPE was the only carbon source in a starving mineral medium. Bioerodibility caused by the carboxylic acid formed throughout abiotic degradation has been observed.     

Electrochemical synthesis of Ag nanoparticles supported on glassy carbon electrode by means of p-isopropyl calix[6]arene matrix and its application for electrocatalytic reduction of H2O2

The silver nanoparticles were prepared on the glassy carbon (GC) electrode, modified with p-iso propyl calix[6]arene, by preconcentration of silver ions in open circuit potential and followed by electrochemical reduction of silver ions. The stepwise fabrication process of Ag nanoparticles was characterized by scanning electron microscopy and electrochemical impedance spectroscopy. The prepared Ag nanoparticles were deposited with an average size of 70 nm and a homogeneous distribution on the surface of electrode. The observed results indicated that the presence of calixarene layer on the electrode surface can control the particle size and prevent the agglomeratione and electrochemical deposition is a promising technique for preparation of nanoparticles due to its easy-to-use procedure and low cost of implementation. Cyclic voltammetry experiments showed that Ag nanoparticles had a good catalytic ability for the reduction of hydrogen peroxide (H₂O₂). The effects of p-isopropyl calix[6]arene concentration, applied potential for reduction of Ag⁺, number of calixarene layers and pH value on the electrocatalytic ability of Ag nanoparticles were investigated. The present modified electrode exhibited a linear range from 5.0 × 10⁻⁵ to 6.5 × 10⁻³ M and a detection limit 2.7 × 10⁻⁵ M of H₂O₂ (S/N = 3) using amperometric method.