Photoactivated capture molecule immobilization in plasmonic nanoapertures in the ultraviolet

We demonstrate a photoactivated surface coupling scheme for achieving spatial overlap between biomolecules of interest and optical near field excitation. Using aluminium nanoapertures, we obtained increased coupling efficiency of biotinylated capture probe oligos to the photoactivated surface due to ~3× nanoaperture enhancement of UV light. We further validate DNA sensor functionality via the hybridization of Cy-5 labeled target oligos, with up to 8× fluorescence enhancement obtained from a commercial microarray scanner. This generic photoimmobilization strategy is an essential step to realizing miniaturized plasmon enhanced detection arrays by virtue of localizing capture molecules to the region of plasmonic enhancement.     

7-Deazapurine and 8-aza-7-deazapurine nucleoside and oligonucleotide pyrene "click" conjugates: synthesis, nucleobase controlled fluorescence quenching, and duplex stability

7-Deazapurine and 8-aza-7-deazapurine nucleosides related to dA and dG bearing 7-octadiynyl or 7-tripropargylamine side chains as well as corresponding oligonucleotides were synthesized. "Click" conjugation with 1-azidomethyl pyrene (10) resulted in fluorescent derivatives. Octadiynyl conjugates show only monomer fluorescence, while the proximal alignment of pyrene residues in the tripropargylamine derivatives causes excimer emission. 8-Aza-7-deazapurine pyrene "click" conjugates exhibit fluorescence emission much higher than that of 7-deazapurine derivatives. They are quenched by intramolecular charge transfer between the nucleobase and the dye. Oligonucleotide single strands decorated with two "double clicked" pyrenes show weak or no excimer fluorescence. However, when duplexes carry proximal pyrenes in complementary strands, strong excimer fluorescence is observed. A single replacement of a canonical nucleoside by a pyrene conjugate stabilizes the duplex substantially, most likely by stacking interactions: 6-12 °C for duplexes with a modified "adenine" base and 2-6 °C for a modified "guanine" base. The favorable photophysical properties of 8-aza-7-deazapurine pyrene conjugates improve the utility of pyrene fluorescence reporters in oligonucleotide sensing as these nucleoside conjugates are not affected by nucleobase induced quenching.     

Self‐diffusion coefficient of ring polymers in semidilute solution

In a topologically constraining environment the size of a flexible nonconcatenated ring polymer (macrocycles) and its dynamics are known to differ from that of linear polymers. Hence, the diffusion coefficient of ring polymers can be expected to be different from linear chains. We present here scaling arguments for the concentration and molecular weight dependence of self‐diffusion coefficient of ring polymers in semidilute solutions, and show that contrary to expectations these scaling relations are identical to what is known for linear polymers. At higher concentrations excluded volume interactions arising from possibilities of segmental overlap can become effective for large ring polymers. In this regime the diffusion coefficient of large ring polymers shows a relatively weaker dependence on concentration and molecular weight. ©2008 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 46: 2370–2379, 2008     

On certain self-decomposable distributions

Probability Theory and Related Fields -     

Passivation of aluminum with alkyl phosphonic acids for biochip applications

Self-assembly of decylphosphonic acid (DPA) and octadecylphosphonic acid (ODPA) was studied on aluminum films using XPS, ToF-SIMS and surface wettability. Modified aluminum films were tested for passivation against silanization and subsequent oligonucleotide attachment. Passivation ratios of at least 450:1 compared to unprotected aluminum were obtained, as quantified by attachment of radio-labeled oligos.     

Removal of Brilliant Green from wastewater using conventional and ultrasonically prepared poly(acrylic acid) hydrogel loaded with kaolin clay: A comparative study

The present work deals with the removal of Brilliant Green dye from wastewater using a poly(acrylic acid) hydrogel composite (PAA-K hydrogel) prepared by incorporation of kaoline clay. The composite has been synthesized using ultrasound assisted polymerization process as well as the conventional process, with an objective of showing the better effectiveness of ultrasound assisted synthesis. It has been observed that the hydrogel prepared by ultrasound assisted polymerization process showed better results. The optimum conditions for the removal of dye are pH of 7, temperature of 35 °C, initial dye concentration of 30 mg/L and hydrogel loading of 1 g. The extent of removal of dye increased with an increase in the contact time and initial dye concentration. A pseudo-second-order kinetic model has been developed to explain the adsorption kinetics of dye on the PAA-K hydrogel. Thermodynamic and kinetic parameters indicate that the adsorption process is spontaneous in nature and the PAA-K hydrogel prepared by ultrasound process is a promising adsorbent compared to conventional process. The obtained adsorption data has also been fitted into commonly used adsorption isotherms and it has been found that Freundlich as well as Langmuir adsorption isotherm models fits well to the experimental results.     

Pyrolysis-controlled synthesis and magnetic properties of sol–gel electrospun nickel cobaltite nanostructures

Poly(chloropropyl-methyl)silsesquioxanes (PCMSQ) were prepared using the base catalyzed sol–gel processing on methyltrimethoxysilane (MTMS) and 3-chloropropyltriethoxysilane (CPTES) with 5:5, 6:4, and 7:3 molar ratios in methanol and water. The PCMSQ with 6:4 molar ratio of MTMS:CPTES, which has the maximum yield, according to the elemental analysis, was chosen and some chlorine atoms of the chloropropyl groups were changed to different amines by refluxing it with ethylenediamine (en), diethylenetriamine (dien), ortho-phenylenediamine (opda), and 2-imidazolidinethion (imt). The amine grafted PCMSQ were then used to support MoO₂(acac)₂ complex and dien grafted PCMSQ with higher metal content was applied to the epoxidation of cis-cyclooctene with TBHP. The product yields were studied by gas liquid chromatography and the catalytic procedure was optimized for the parameters involved such as the solvent and oxidant. The catalytic activity of this catalyst also was investigated toward epoxidation of some other alkenes. It was also applied to check its reuse ability.

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In this research, micro-spherical poly-organo-silsesquioxane was prepared using the base catalyzed sol–gel processing of methyltrimethoxysilane and 3-chloropropyltriethoxysilane with different molar ratios. The sample which has the maximum yield, was used to graft MoO₂(acac)₂ and for the successful anchoring, some chlorine atoms of the chloropropyl side groups were changed to amines. Then the prepared catalyst with higher molybdenum content was used for the epoxidation of cis-cyclooctene and some other alkenes with TBHP.