Flux synthesis, crystal structures, and solid-state NMR spectroscopy of two indium silicates containing varied In-O coordination geometries

Two novel indium silicates, K5In3Si7O21 (1) and K4In2Si8O21 (2), have been synthesized by a flux-growth method and characterized by single-crystal X-ray diffraction. The structure of 1 consists of siebener single chains of corner-sharing SiO4 tetrahedra running along the b axis linked via corner-sharing by In2O9 face-sharing octahedral dimers and InO5 trigonal bipyramids to form a 3D framework. The structure of 2 consists of a 3D silicate framework containing 6- and 14-ring channels. InO5 square pyramids are located within the 14-ring channels sharing corners with the silicate framework. The solid-state 29Si MAS NMR spectrum of compound 1 was recorded; it shows the influence of the indium atoms in the second coordination sphere of the silicon on the chemical shift. Crystal data: 1, orthorhombic, Pna21 (No. 33), a = 12.4914(3) A, b = 16.8849(3) A, c = 10.2275(2) A, V = 2157.1(1) A3 and Z = 4; 2, monoclinic, P21/n (No. 14), a = 8.4041(3) A, b = 11.4919(4) A, c = 10.4841(3) A, beta = 90.478(2) degrees , V = 1012.5(1) A3 and Z = 2.     

Catalytic conjugate additions of nitrogen-, phosphorus-, and carbon-containing nucleophiles by amphoteric vanadyl triflate

A series of carbamates, amides, N-tosyl amides, (hetero)arenes, and hydrogen phosphines/phosphites has been examined as nucleophiles for (hetero)Michael-type additions to enones and enamides catalyzed by amphoteric vanadyl triflate under mild and neutral conditions. The newly developed C-N, C-P, and C-C bond-formation protocols were carried out smoothly in good to high yields without intervention of any 1,2-additions.     

Bioinformatics approaches for disulfide connectivity prediction

Protein structure prediction with computational methods has gained much attention in the research fields of protein engineering and protein folding studies. Due to the vastness of conformational space, one of the major tasks is to restrain the flexibility of protein structure and reduce the search space. Many studies have revealed that, with the information of disulfide connectivity available, the search in conformational space can be dramatically reduced and lead to significant improvements in the prediction accuracy. As a result, predicting disulfide connectivity using bioinformatics approaches is of great interest nowadays. In this mini-review, the prediction of disulfide connectivity in proteins will be discussed in four aspects: (1) how the problem formulated and the computational techniques used in the literatures; (2) the effects of the features adopted to encode the information and the biological meanings implied; (3) the problems encountered and limitations of disulfide connectivity prediction; and (4) the practical usages of predicted disulfide bond information in molecular simulation and the prospects in the future.     

Effect of nucleobase sequence on the proton-transfer reaction and stability of the guanine-cytosine base pair radical anion

The formation of base pair radical anions is closely related to many fascinating research fields in biology and chemistry such as radiation damage to DNA and electron transport in DNA. However, the relevant knowledge so far mainly comes from studies on isolated base pair radical anions, and their behavior in the DNA environment is less understood. In this study, we focus on how the nucleobase sequence affects the properties of the guanine-cytosine (GC) base pair radical anion. The energetic barrier and reaction energy for the proton transfer along the N(1)(G)-H···N(3)(C) hydrogen bond and the stability of GC˙(-) (i.e., electron affinity of GC) embedded in different sequences of base-pair trimer were evaluated using density functional theory. The computational results demonstrated that the presence of neighboring base pairs has an important influence on the behavior of GC˙(-) in the gas phase. The excess electron was found to be localized on the embedded GC and the charge leakage to neighboring base pairs was very minor in all of the investigated sequences. Accordingly, the sequence behavior of the proton-transfer reaction and the stability of GC˙(-) is chiefly governed by electrostatic interactions with adjacent base pairs. However, the effect of base stacking, due to its electrostatic nature, is severely screened upon hydration, and thus, the sequence dependence of the properties of GC˙(-) in aqueous environment becomes relatively weak and less than that observed in the gas phase. The effect of geometry relaxation associated with neighboring base pairs as well as the possibility of proton transfer along the N(2)(G)-H···O(2)(C) channel have also been investigated. The implications of the present findings to the electron transport and radiation damage of DNA are discussed.     

Facile synthesis of 5,10,15-hexaaryl truxenes: structure and properties

A new synthesis of 5,10,15-hexaaryltruxene derivatives has been developed. Experimental observations and theoretical calculations confirmed that the presence of aryl substituents on the sp(3)-hybridized bridge carbon atoms had an effect on the photophysical properties of the truxene core. Interestingly, the cage compound 11 possessing a distorted truxene core was verified by X-ray diffraction analysis; the influence of the peripheral aryl substituents on the photophysical properties of the truxene core was diminished because of its molecular rigidity.     

Synthesis and characterization of a new chromophor with acid/base-sensitive fluorescence emission

A new two-photon absorption compound,2-{4-((dicyanomethylidene-5,5-dimethylcyclohexl)vinyl]phenyl}imidazo[4,5- f][l,10]phenanthroline(DDVPIP),was synthesized and characterized.The one-photon excited fluorescence(OPEF) and two-photon excited fluorescence(TPEF) of DDVPIP are sensitive to the acid/base of the solution,which arc enhanced in basic solution but weakened in acidic solution.Charge-transfer(CT) states of DDVPIP were calculated through theory methods to explain its acid/ base-sensitive fluorescent properties.     

Molecular dynamic-secondary ion mass spectrometry (D-SIMS) ionized by co-sputtering with C60+ and Ar+

Dynamic secondary ion mass spectrometry (D-SIMS) analysis of poly(ethylene terephthalate) (PET) and poly(methyl methacrylate) (PMMA) was conducted using a quadrupole mass analyzer with various combinations of continuous C(60)(+) and Ar(+) ion sputtering. Individually, the Ar(+) beam failed to generate fragments above m/z 200, and the C(60)(+) beam generated molecular fragments of m/z ~1000. By combining the two beams, the auxiliary Ar(+) beam, which is proposed to suppress carbon deposition due to C(60)(+) bombardment and/or remove graphitized polymer, the sputtering range of the C(60)(+) beam is extended. Another advantage of this technique is that the high sputtering rate and associated high molecular ion intensity of the C(60)(+) beam generate adequate high-mass fragments that mask the damage from the Ar(+) beam. As a result, fragments at m/z ~900 can be clearly observed. As a depth-profiling tool, the single C(60)(+) beam cannot reach a steady state for either PET or PMMA at high ion fluence, and the intensity of the molecular fragments produced by the beam decreases with increasing C(60)(+) fluence. As a result, the single C(60)(+) beam is suitable for profiling surface layers with limited thickness. With C(60)(+)-Ar(+) co-sputtering, although the initial drop in intensity is more significant than with single C(60)(+) ionization because of the damage introduced by the auxiliary Ar(+), the intensity levels indicate that a more steady-state process can be achieved. In addition, the secondary ion intensity at high fluence is higher with co-sputtering. As a result, the sputtered depth is enhanced with co-sputtering and the technique is suitable for profiling thick layers. Furthermore, co-sputtering yields a smoother surface than single C(60)(+) sputtering.     

Direct synthesis of bifunctional periodic mesoporous benzene-silicas functionalized with a high loading of carboxylic acid groups

Well-ordered periodic mesoporous benzene-silicas functionalized with a high loading of pendant carboxylic acid groups (up to 60 mol% based on silica) have been successfully synthesized via co-condensation of 1,4-bis(triethoxysilyl)benzene and carboxyethylsilanetriol sodium salt using Pluronic P123 as a template and KCl as an additive.     

Mechanochemical synthesis of poly(2,5-dimethoxy aniline) nanobelts and its electrochemical performance in hybrid supercapacitors

A solvent-free mechanochemical route for the preparation of poly(2,5-dimethoxyaniline) hydrochloride nanostructures is developed and reported in the article. High conductivity, good crystallinity, and nanostructured morphology are observed for the prepared polymer. This polymeric powder is utilized as a cathode material in hybrid supercapacitor and its electrochemical performance is evaluated and discussed in this short report. The maximum specific capacitance of the poly(2,5-dimethoxyaniline) hydrochloride/activated carbon hybrid supercapacitor is found to be 125 F g⁻¹ at 1 mA cm⁻² current density. The cell delivers a specific energy as high as 50 Wh kg⁻¹ at a specific power of 97 W kg⁻¹ and also exhibits an excellent cycle performance with more than 99% coulombic efficiency and the maintenance of 85% of its initial capacitance after 1,000 cycles.