Myoglobin-CO substate structures and dynamics: multidimensional vibrational echoes and molecular dynamics simulations

Spectrally resolved infrared stimulated vibrational echo data were obtained for sperm whale carbonmonoxymyoglobin (MbCO) at 300 K. The measured dephasing dynamics of the CO ligand are in agreement with dephasing dynamics calculated with molecular dynamics (MD) simulations for MbCO with the residue histidine-64 (His64) having its imidazole epsilon nitrogen protonated (N(epsilon)-H). The two conformational substate structures B(epsilon) and R(epsilon) observed in the MD simulations are assigned to the spectroscopic A(1) and A(3) conformational substates of MbCO, respectively, based on the agreement between the experimentally measured and calculated dephasing dynamics for these substates. In the A(1) substate, the N(epsilon)-H proton and N(delta) of His64 are approximately equidistant from the CO ligand, while in the A(3) substate, the N(epsilon)-H of His64 is oriented toward the CO, and the N(delta) is on the surface of the protein. The MD simulations show that dynamics of His64 represent the major source of vibrational dephasing of the CO ligand in the A(3) state on both femtosecond and picosecond time scales. Dephasing in the A(1) state is controlled by His64 on femtosecond time scales, and by the rest of the protein and the water solvent on longer time scales.     

Characterization of p-aminobenzamidine-based sorbent and its use for high-performance affinity chromatography of trypsin-like proteases

An affinity sorbent, hydrophilic polymer-based carrier of different pore size (Toyopearl) with immobilized p-aminobenzamidine (ABA), has been prepared. Its basic properties and some applications for protein purification were studied. ABA, which is a synthetic inhibitor for trypsin-like proteases, was covalently immobilized to Toyopearl by reductive amination. The ligand density and binding capacity for porcine trypsin varied depending on the pore size of Toyopearl. The maximum binding capacity of the immobilized p-aminobenzamidine Toyopearl (ABA-Toyopearl) for trypsin was more than 40 mg/ml gel. ABA-Toyopearl thus obtained was very stable below pH 8 and was successfully used for high-performance affinity chromatography of trypsin-like proteases such as trypsin, thrombin, tissue-type plasminogen activator or urokinase in a single step at 25 degrees C.     

Synthesis of poly(diallyl phthalate) and silica gel polymer hybrids utilizing π–π interactions

We report here the synthesis of homogeneous polymer hybrids of poly(diallyl phthalate) (PDAP) and silica by utilizing π–π interactions. Use of arylalkoxysilanes such as phenyltrimethoxysilane (PhTMOS), phenethyltrimethoxysilane (PhenethylTMOS) and mesityltrimethoxysilane (MesTMOS) as sources for inorganic phases resulted in optically transparent PDAP-silica polymer hybrids in a wide range of organic and inorganic content ratios. On the other hand, alkoxysilanes such as tetramethoxysilane (TMOS), methyltrimethoxysilane (MTMOS) and i-butyltrimethoxysilane (iBuTMOS) resulted in phase separated, turbid solids. A mixture of tetramethoxysilane (TMOS) and PhTMOS was also studied for the synthesis of PDAP-silica gel polymer hybrids to control the cross-linking density in the inorganic phase. Homogeneity was found to be improved with an increase in PhTMOS content. These homogeneous PDAP polymer hybrids were found to have high thermal stability which wasachieved by nano-scale dispersion of PDAP in silica through extensiveinterface interactions. The homogeneity of the polymer hybrids was confirmed by SEM and TEM, which demonstrate a nanometer level integration of the organic polymer and the inorganic phase.     

High‐Pressure Synthesis of A2NiO2Ag2Se2 (A=Sr,Ba) with a High‐Spin Ni2+ in Square‐Planar Coordination

Square‐planar coordinate Ni²⁺ ions in oxides are exclusively limited to a low‐spin state (S=0) owing to extensive crystal field splitting. Layered oxychalcogenides A₂Ni^IIO₂Ag₂Se₂ (A=Sr, Ba) with the S=1 NiO₂ square lattice are now reported. The structural analysis revealed that the Ni²⁺ ion is under‐bonded by a significant tensile strain from neighboring Ag₂Se₂ layers, leading to the reduction in crystal field splitting. Ba₂NiO₂Ag₂Se₂ exhibits a G‐type spin order at 130 K, indicating fairly strong in‐plane interactions. The high‐pressure synthesis employed here possibly assists the expansion of NiO₂ square lattice by taking the advantage of the difference in compressibility in oxide and selenide layers.     

Rhodium‐Catalyzed Stitching Polymerization of 1,5‐Hexadiynes and Related Oligoalkynes

A new mode of polymerization, rhodium‐catalyzed stitching polymerization, has been developed for the synthesis of π‐conjugated polymers with bridged repeating units from nonconjugated 1,5‐hexadiynes containing both terminal and internal alkyne moieties as monomers. The polymerization proceeded smoothly with a high degree of stitching efficiency under mild conditions, and 1,5,9‐decatriyne and 1,5,9,13‐tetradecatetrayne monomers could also be employed. The present polymerization strategy would be particularly beneficial for the synthesis of polymers consisting of a repeating unit that is difficult to prepare as a stable monomer because it does not require the use of a preformed bridged π‐conjugated monomer.     

Preparation and Crystal Structures of 4-(4′-Pyridylthio)-1-methylpyridinium Salts: Assembly of a Donor-Acceptor-Type Molecule Containing a Sulfide Bridge

A series of ionic 4-(4′-pyridylthio)-1-methylpyridinium salts with different counteranions (1, I⁻; 2, BF⁻₄; 3, PF⁻₆; and 4, OTf⁻, where OTf=trifluoromethanesulfonate) have been prepared. Structural analysis reveals that the cation exhibits a variety of stacking structures dependent on the anion. Compound 1 crystallizes in space group P2_1/n (#14), with a=10.764(3) Å, b=9.601(5) Å, c=13.105(3) Å, β=108.35(2), V=1285.4(8) ų, and Z=4. In this compound, each cation moiety is stacked in a helical arrangement along the c-axis. Compound 2, which is isomorphous to 1, has space group P2_1/n (#14), with a=11.647(2) Å, b=9.203(3) Å, c=13.232(2) Å, β=108.42(2), V=1345.6(5) ų, and Z=4. Compound 3 crystallizes in space group P2_1/n (#14), with a=8.06(1) Å, b=17.43(1) Å, c=10.30(1) Å, β=103.0(1), V=1410(3) ų, and Z=4. In this salt, the cation molecules assume a head-to-tail stacking arrangement, forming a polar pseudo 1-D chain. Compound 4 crystallizes in space group Pb? (#2), with a=7.585(4) Å, b=15.443(7) Å, c=6.775(4) Å, α=99.33(4), β=108.35(2)^o, γ=98.37(4), V=756.6(7) ų, and Z=2. The structure of 4 consists of a columnar stacking of pyridine moieties, with the cation moieties surrounded by the counteranions. Calculations show that the 4-(4′-pyridylthio)-1-methylpyridinium cation may be a good building block for second harmonic generation (SHG) materials, even though salts 1-4 crystallized in centrosymmetric structures and were SHG inactive.     

Detailed Analysis of the Crystal Structures and Magnetic Properties of a Dysprosium(III) Phthalocyaninato Sextuple-Decker Complex: Weak f–f Interactions Suppress Magnetic Relaxation

In the research field of single-molecule magnets (SMMs), lanthanoid–lanthanoid interactions, so-called f–f interactions, are known to affect the SMM properties, although their magnitudes are small. In this article, an SMM with very weak f–f interactions is reported, and the effects of the interactions on the SMM properties are discussed. X-ray structural analysis of the Dy^III-Cd^II-phthalocyaninato sextuple-decker complex (Dy₂Cd₃) reveals that the intramolecular Dy−Dy length in Dy₂Cd₃ is more than 13 Å, which is longer than the intermolecular Dy−Dy length. Even though the two Dy^III ions are far apart, intermolecular ferromagnetic dipole–dipole interactions are observed in Dy₂Cd₃. From detailed analysis of ac magnetic susceptibilities, quantum tunneling of the magnetization (QTM) in Dy₂Cd₃ is partially suppressed owing to the existence of very weak Dy−Dy interactions. Our results show that even very weak Dy−Dy interactions act as a dipolar bias, suppressing QTM.     

Room-Temperature Phosphorescence from a Series of 3-Pyridylcarbazole Derivatives

Exploration of pure metal-free organic molecules that exhibit strong room-temperature phosphorescence (RTP) is an emerging research topic. In this regard, unveiling the design principles for an efficient RTP molecule is an essential, but challenging, task. A small molecule is an ideal platform to precisely understand the fundamental role of each functional component because the parent molecule can be easily derivatized. Here, the RTP behaviors of a series of 3-pyridylcarbazole derivatives are presented. Experimental studies in combination with theoretical calculations reveal the crucial role of the n orbital on the central pyridine ring in the dramatic enhancement of the intersystem crossing between the charge-transfer-excited singlet state and the locally excited triplet states. Single-crystal X-ray crystallographic studies apparently indicate that both the pyridine ring and fluorine atom contribute to the enhancement of the RTP because of the restricted motion owing to weak C−H⋅⋅⋅N and H⋅⋅⋅F hydrogen-bonding interactions. The single crystal of the fluorine-substituted derivative shows an ultra-long phosphorescent lifetime (τ_P) of 1.1 s and a phosphorescence quantum yield (Φ_P) of 1.2 %, whereas the bromine-substituted derivative exhibits τ_P of 0.15 s with a Φ_P of 7.9 %. We believe that this work provides a fundamental and universal guideline for the generation of pure organic molecules exhibiting strong RTP.     

Synthesis of Anthracene Derivatives with Azaacene-Containing Iptycene Wings and the Utilization as a Dopant for Solution-Processed Organic Light-Emitting Diodes

Substituted acene derivatives are regarded as promising materials for organic electronic devices such as organic light-emitting diodes (OLEDs). In particular, anthracene derivatives are known to exhibit good fluorescence property, with the air stability and solubility in common organic solvents expected to give advantages for solution-processed device fabrication. In this study, a series of bistriisopropylsilyl(TIPS)ethynyl anthracene derivatives with azaacene-containing iptycene wings have been synthesized by using condensation reactions. Effects of size of azaacenes on optical properties and packing structures were investigated. UV/Vis absorption and fluorescence spectra indicate that the π-elongation of iptycene units has small effects on the overall π-system, which is also supported by electrochemical measurements. Secondly, single-crystal X-ray analysis implies that the molecules likely have interactions with the iptycene units of adjacent molecules, while the iptycene wings and TIPSethynyl groups can prevent the central anthracene unit from undesirable non-radiative energy loss. Finally, the most emissive derivative was used as a dopant for solution-processed OLEDs, showing obvious electroluminescence with a luminance of over 920 cd m⁻².