Myoglobin-CO substate structures and dynamics: multidimensional vibrational echoes and molecular dynamics simulations

Spectrally resolved infrared stimulated vibrational echo data were obtained for sperm whale carbonmonoxymyoglobin (MbCO) at 300 K. The measured dephasing dynamics of the CO ligand are in agreement with dephasing dynamics calculated with molecular dynamics (MD) simulations for MbCO with the residue histidine-64 (His64) having its imidazole epsilon nitrogen protonated (N(epsilon)-H). The two conformational substate structures B(epsilon) and R(epsilon) observed in the MD simulations are assigned to the spectroscopic A(1) and A(3) conformational substates of MbCO, respectively, based on the agreement between the experimentally measured and calculated dephasing dynamics for these substates. In the A(1) substate, the N(epsilon)-H proton and N(delta) of His64 are approximately equidistant from the CO ligand, while in the A(3) substate, the N(epsilon)-H of His64 is oriented toward the CO, and the N(delta) is on the surface of the protein. The MD simulations show that dynamics of His64 represent the major source of vibrational dephasing of the CO ligand in the A(3) state on both femtosecond and picosecond time scales. Dephasing in the A(1) state is controlled by His64 on femtosecond time scales, and by the rest of the protein and the water solvent on longer time scales.     

Complex formation of amphiphilic polymers with azo dyes and their photoviscosity behavior

The hydrophobic interaction of amphiphilic copolymers, which contain 2-hydroxyethyl methacrylate(HEMA) and 1vinyl-2-pyrrolidone (VPy), with Methyl Orange (MO) was compared with that of HEMA-acrylamide (AAm) copolymers to deduce the correlation between their complexation ability in a photochromic azo dye and the photoviscosity effect in aqueous copolymer/dye complex solution. On the basis of the dialysis data and fluorometric analysis it appeared that the complexation dependence on HEMA content in the copolymers was due to the hydrophobic interaction between the polymer and the dye. For a comparable HEMA content AAm copolymers bound less MO than VPy copolymers. It was confiied by photoviscosity measurements that the conformation of the complex composed of photochromic azo dye and HEMA copolymer changed reversibly in response to the photo- and thermal isomerization of the dye. In HEMA-AAm copolymer systems the photoviscosity effect was small compared with that of HEMA-VPy copolymer systems. From these results it was concluded that the complexation ability of polymers due to the hydrophobic interaction was an important factor in producing a large photoinduced conformational change in water.     

Preparation and photochromism of diarylethene covalently bonded onto layered sodium-magadiite surfaces

Diarylethene derivatives (DE) covalently bonded to silanol oxygens of layered silicate surfaces, i.e., magadiite (Mag), were synthesized and investigated for their photochromic behavior. The DE-Mag layered hybrids were found to undergo reversible color change by alternating UV and visible light irradiation. A more highly efficient, reproducible photochromic behavior was realized with DE-Mag than with a corresponding DE-Si possessing silyl substituents on DE in place of the Mag surface. Moreover, the present covalently bonded DE exhibited an improvement over DE hybrids incorporated in layered double hydroxide (LDH) clays, in which the repetitive photochromic behavior decreased during alternating irradiation, due to the accumulation of the photochemically inert parallel isomers of DE.     

A new reforming process based on CH4 decomposition using a hydrogen-permeating membrane reactor

A new reforming process was studied using Ni/SiO₂ with a hydrogen-permeating membrane reactor. Nickel catalyst supported on SiO₂ is highly active for CH₄?H₂O?O₂ reaction in membrane reactor and the reaction close to CH₄+0.35O₂+1.3H₂O→CO₂+3.3H₂ proceeds at 873 K. Since the selectivity to carbon and CO₂ increased and decreased with decreasing contact time respectively, it is considered that the reaction was started by decomposition of CH₄ followed by oxidation of C and water shift reaction. Therefore, the reaction mechanism was different from so-called autothermal reforming (ATR) reaction.     

Guest shape-responsive fitting of porous coordination polymer with shrinkable framework

In situ synchrotron X-ray powder diffraction patterns of porous coordination polymers [[Cu(2)(pzdc)(2)(bpy)].G] have been measured (pzdc = pyrazine-2,3-dicarboxylate, bpy = 4,4'-bipyridine) (where G = H(2)O for CPL-2 superset H(2)()O, G = benzene for CPL-2 superset benzene, and G = void for the apohost). The structures of apohost and CPL-2 superset benzene were determined from Rietveld analysis. Adsorption of benzene in the channels induced a remarkable contraction in the crystal (b axis; 6.8%, volume; 4.9%), although the channels were occupied by the benzene molecules. This crystal transformation provides a new pore structure that is well suited for benzene molecules, and we denote it as a "shape-responsive fitting" transformation. This type of pore gives rise to a new guideline: frameworks can be composed of flexible motifs that are linked via strong bond and/or stiff motifs that are connected via weaker bonds.     

Synthesis of 1,1-difluoroethylsilanes and their application for the introduction of the 1,1-difluoroethyl group

1,1-Difluoroethysilanes (R₃SiCF₂CH₃, R = Me or Et) were synthesized from 1,1-difluoroethyl phenyl sulfone and chlorosilanes using magnesium metal via reductive 1,1-difluoroethylation. It was confirmed that 1,1-difluoroethylsilanes were effective 1,1-difluoroethylating reagents for carbonyl compounds.     

A comparison of supercritical carbon dioxide and organic solvents for the intercalation of 4-phenylazoaniline into a pillared clay mineral

The intercalation of 4-phenylazoaniline (PAA) in supercritical carbon dioxide (SC-CO(2)) into montmorillonite (TMA-Mnt) pillared with tetramethylammonium ions at 313 K and 15 MPa was investigated. The adsorption rate and equilibrium PAA uptake were compared with those in n-hexane, CCl(4) and benzene solutions at 313 K. The XRD and N(2) adsorption/desorption analyses showed that TMA-Mnt after adsorption of PAA in SC-CO(2) had the same pore structure as after adsorption of PAA in normal solvents. SC-CO(2) was found to be a good medium for PAA adsorption owing to its having a relatively high adsorption rate and the highest adsorptivity at the same PAA concentration. The properties of PAA adsorption on TMA-Mnt could be well elucidated by the difference in solubility parameters between liquid and solid phases.     

Manipulation of droplets by dynamically controlled wetting gradients

The reversible transportation of droplets was realized by spatiotemporal control of the wetting gradient. The surface wetting was reversibly regulated by using electrochemical reactions of the ferrocenyl (Fc) alkanethiol monolayer, and the wetting gradient was generated by the application of the in-plane bias voltage to the substrate. The back-and-forth motion of the wetting boundary, where the surface changed from wetting to repulsive, sequentially caused a droplet unidirectional spreading and shrinking on the surface. These unidirectional deformations resulted in the net transport of the droplet in an inchwormlike manner. The droplet moved backward when the direction of the in-plane bias voltage was reversed.     

Synthesis of the proposed structure of plakevulin A: revised structure of plakevulin A

A total synthesis of the proposed structure of plakevulin A was accomplished. However, the NMR spectral data of the synthetic plakevulin A were not identical of those of the reported compound. We next converted the synthetic plakevulin A into 1-dihydrountenone A. The ¹H and ¹³C NMR spectral data of 1-dihydrountenone A were identical with those of reported plakevulin A except for the peaks derived from levulinic acid. Thus, we repurified sample of the natural product and confirmed that the natural sample contained 1-dihydrountenone A and levulinic acid in the ratio of one to one. We also found that not plakevulin A but 1-dihydountenone A possessed the inhibitory activity against mammalian DNA polymerases α and β.     

Highly regio- and stereoselective hydrometallation reactions of fluorine-containing internal alkynes: Novel approaches to fluoroalkylated alkenes

Hydroalumination, hydrocupration, and hydroboration reactions of various fluorine-containing alkynes were investigated. The alkyne reacted smoothly with 2.0 equiv. of Red-Al at −78 °C to give the hydroaluminated adduct in a highly regio- and stereoselective manner, which was treated with iodine, the corresponding vinyliodide being produced in moderate yield. Hydrocupration of the alkynes also took place, but the resulting vinylmetal reacted with various electrophiles sluggishly. In sharp contrast, the reaction with dicyclohexylborane proceeded smoothly to afford the cis-addition products preferentially, which were subjected to Suzuki-Miyaura cross-coupling reaction, leading to trisubstituted alkenes in high yields.