Probing the Binding of Syzygium-Derived α-Glucosidase Inhibitors with N- and C-Terminal Human Maltase Glucoamylase by Docking and Molecular Dynamics Simulation

Human maltase glucoamylase (MGAM) is a potent molecular target for controlling post prandial glucose surplus in type 2 diabetes. Binding of small molecules from Syzygium sp. with α-glucosidase inhibitory potential in MGAM has been investigated in silico. Our results suggest that myricetin was the most potent inhibitor with high binding affinity for both N- and C-terminals of MGAM. Molecular dynamics revealed that myricetin interacts in its stretched conformation through water-mediated interactions with C-terminal of MGAM and by normal hydrogen bonding with the N-terminal. W1369 of the extended 21 amino acid residue helical loop of C-terminal plays a major role in myricetin binding. Owing to its additional sugar sites, overall binding of small molecules favours C-terminal MGAM.     

Effect of ammonia,ammonia-water,and sulfuric acid on the HO2 + HO2 → H2O2 + 3O2 reaction in troposphere: Competition between stepwise and one-step mechanisms

A detailed theoretical study on the reaction mechanisms for the formations of H₂O₂ + ³O₂ from the self-reaction of HO₂ radicals under the effect of NH₃, H₃N···H₂O, and H₂SO₄ catalysts was performed using the CCSD(T)/CBS//M06-2X/aug-cc-pVTZ method. The rate constant was computed using canonical variational transition state theory (CVT) with small curvature tunneling (SCT). Our results indicate that NH₃-, H₃N···H₂O-, and H₂SO₄-catalyzed reactions could proceed through both one-step and stepwise routes. Calculated rate constants show that the catalyzed routes in the presence of the three catalysts all prefer stepwise pathways. Compared to the catalytic efficiency of H₂O, the efficiencies of NH₃, H₃N···H₂O, and H₂SO₄ are much lower due to their smaller relative concentrations. The present results have provided a definitive example of how basic and acidic catalysts influence the atmospheric reaction of HO₂ + HO₂ → H₂O₂ + ³O₂. These results further encourage one to consider the effects of basic and acidic catalysts on the related atmospheric reactions. Thus, the present investigation should have broad implications in the gas-phase reactions of the atmosphere.     

Genome Mining of Oxidation Modules in trans‐Acyltransferase Polyketide Synthases Reveals a Culturable Source for Lobatamides

Bacterial trans‐acyltransferase polyketide synthases (trans‐AT PKSs) are multimodular megaenzymes that biosynthesize many bioactive natural products. They contain a remarkable range of domains and module types that introduce different substituents into growing polyketide chains. As one such modification, we recently reported Baeyer–Villiger‐type oxygen insertion into nascent polyketide backbones, thereby generating malonyl thioester intermediates. In this work, genome mining focusing on architecturally diverse oxidation modules in trans‐AT PKSs led us to the culturable plant symbiont Gynuella sunshinyii, which harbors two distinct modules in one orphan PKS. The PKS product was revealed to be lobatamide A, a potent cytotoxin previously only known from a marine tunicate. Biochemical studies show that one module generates glycolyl thioester intermediates, while the other is proposed to be involved in oxime formation. The data suggest varied roles of oxygenation modules in the biosynthesis of polyketide scaffolds and support the importance of trans‐AT PKSs in the specialized metabolism of symbiotic bacteria.     

Experimental Study on the Behaviour of Local Laminar Separation Bubble at a Rectangular Wing Section

This paper identifies laminar separation bubbles at the root or span-wise midsection of a rectangular wing using direct surface pressure measurements in the wind tunnel and analyses their behavior at different Reynolds numbers and angles of attack. The separation, transition, and reattachment locations are determined as functions of the angles of attack and the Reynolds number. The transition structure and turbulence characteristics in the separated shear layer are studied using laser Doppler velocimetry. Surface pressure data and simultaneously acquired velocity signals are correlated to show the pattern of growing disturbances in the shear layer. Surface oil flow visualizations clarified the wingtip and separation bubble’s interactions near the leading edge of the wing at the higher angles of attack. Turbulence statistics are also calculated from the streamwise velocity distributions, and an apparent deviation is observed for the skewness and flatness values from the normal distributions in the near-wall region. The separation bubble effect on aerodynamic coefficients of a 3D rectangular wing root section is studied and reported.

     

Biocidal Organotin Compounds. Part 2. Synthesis,Characterization and Biocidal Properties of Triorganotin(IV) Hydantoic Acid Derivatives and the Crystal Structures of Triphenyltin and Tricyclohexyltin Hydantoates

The preparation and spectroscopic (¹H NMR, UV and IR) characterization of three R₃Sn(O₂CCH₂N(H)C(O)NH₂) [R=Ph, c-Hex (cyclohexyl) or n-Bu] compounds are reported. A different mode of coordination is indicated for the hydantoate ligand in the R=Ph compound compared with the R=c-Hex and R=n-Bu compounds, as confirmed by a crystallographic analysis. The structure of [Ph₃Sn(O₂CCH₂N(H)C(O)NH₂)] is polymeric owing to the presence of bridging hydantoate ligands such that each ligand coordinates one tin atom, via one of the carboxylate oxygen atoms, and a symmetry-related tin atom via the carbonyl group at the other end of the molecule. The structure features distorted trigonal-bipyramidal tin atom geometries with a trans -R₃SnO₂ motif. The structure of [c-Hex₃Sn(O₂CCH₂N(H)- C(O)NH₂)], by contrast, is monomeric, distorted tetrahedral, as the carboxylate group is monodentate and there are no additional tin–ligand interactions. The structures are each stabilized by a number of intermolecular hydrogen bonds. Fungitoxicity and phytotoxicity studies indicate that the R=n-Bu derivative is the more active compound.     

Thermodynamic analysis of solute-solvent interactions in the solubility-temperature relations of alkaline-earth metal tungstates and sodium tungstate

This paper presents a study of thermodynamic analysis of the solubility-temperature phase diagrams for solutions of calcium, strontium and barium tungstate in sodium tungstate melts in the temperature range 660 to 1200 °C. At temperatures 1000 °C and above, the solutions were ideal but below 1000 °C the solutions became non-ideal and the non-ideality increased with decreasing temperature. At any mole fraction concentration of the solute the excess free energies of mixing and the activity coefficients increased in the order CaWO₄ > SrWO₄ > BaWO₄, whereas the excess chemical potentials decreased in the order CaWO₄ < SrWO₄ < BaWO₄.     

Evaluation of degree of crystallization by optical microscopy and chemical analysis in crystallization of alkaline-earth metal tungstates from solutions in lithium chloride melts

A comparative study of the accuracy of optical microscopy and chemical analysis of residual solutions for evaluation of degree of crystallisation was carried out to ascertain their suitability for kinetics study of CaWO₄ and BaWO₄ crystallisation from LiCl melts (i) by continuous cooling at a constant cooling rate, and (ii) at constant temperature from a supersaturated solution. Chemical analysis of residual solution does not give desirable accuracy for the case (i) for α_t values <0.30, and for the case (ii) for α_t values <0.60. Optical microscopy was more accurate and suitable for both cases.     

Waveguide arrays as plasmonic metamaterials: transmission below cutoff

Since the work of Ebbesen et al. [Nature (London) 391, 667 (1998)], there has been immense interest in the optical properties of subwavelength holes in metal layers. While the enhanced transmission observed is generally associated with surface plasmon polaritons (SPPs), theoretical predictions suggest a similar response with perfectly conducting materials. However, Pendry et al. [Science 305, 847 (2004)] proposed that, if textured on a subwavelength scale, even perfect conductors support surface modes. Here, using microwave radiation incident upon an array of metal waveguides, we observe peaks in the transmissivity below cutoff and confirm the crucial role of these SPP-like modes in the mechanism responsible.