Fluorescence studies of the kinetics of binding and removal of metal ions in proteins

Fluorescence-quenching studies involving native protein fluorescence are used to monitor the rates of binding and removal of Hg(II), Cu(II), Ag(I), methylmercury(I), and p-chloro-mercuribenzoate in various protein systems (ovalbumin, bovine serum albumin, myoglobin, lysozyme, and insulin). In some cases, the fluorescence quenching as a function of time can be used to evaluate the rate constants for the binding of a particular metal ion to a protein. In many cases, multiple binding sites with different rate constants can be differentiated. The restoration of fluorescence vs. time on addition of various chelating agents (BAL, EDTA, cysteine and penicilamine) to the metal/protein system can be used to monitor metal ion removal. Multiple binding sites also can be differentiated kinetically in the removal experiments. In some cases, the appearance of multiple steps in the binding or removal or a metal or ion could be explained by small conformational changes. The rates of removal can help in estimating the effectiveness of various reagents as models for drugs in the treatment of heavy-metal poisoning.     

Infinite-dilution viscoelastic properties of sodium poly(styrene sulfonate)

The storage and loss shear moduli G′ and G″ of dilute solutions of two samples of sodium poly(styrene sulfonate) with molecular weights (M) of 3.28 × 10⁵ have been measured. The Birnboim–Schrag multiple-lumped resonator technique was used in the frequency range 100–8000 Hz, and the intrinsic moduli were obtained by extrapolation to infinite dilution. Measurements were performed over the temperature range from 1.0 to 25.0°C in aqueous solvents containing from 0 to 60% by weight glycerol and from 0.001 to 0.005M added salt. The large intrinsic viscosities indicated high extension of the polymer, and the frequency dependences of G′ and G″ were matched well by hybrid relaxation spectra combining rodlike and coil-like behavior. In a solvent containing 0.001M sodium ion and no glycerol, the end-over-end rotational relaxation times for the two molecular weights corresponded to proportionality to the 1.7 power of M. With increasing molecular weight, ionic strength, and/or glycerol concentration, the polyelectrolyte appeared to become less extended, and its behavior more nearly coil-like.     

Structures of N,N-dialkoxyamides: pyramidal anomeric amides with low amidicity

The first X-ray structures of two anomeric N,N-dialkoxyamides (2 and 3) have been obtained, which confirm that they are highly pyramidalized at nitrogen and have long N-CO bonds, a characteristic of other anomeric amides and a consequence of drastically reduced amidicity. The crystals also demonstrate chirality at the amide nitrogen in the solid state. The structures are well-predicted by density functional calculations using N,N-dimethoxyacetamide as a model. The amidicity of N,N-dimethoxyacetamide has been estimated by two independent methods, COSNAR and a new transamidation method, which give almost identical resonance stabilization energies of -8.6 kcal mol(-1) and only 47% that of N,N-dimethylacetamide computed at the same level. The total destabilization is composed of a resonance and an inductive contribution, which we have evaluated separately. The electronegative oxygens at nitrogen are responsible for localization of the nitrogen lone pair on the amide nitrogen, a factor that contributes to a loss of resonance over and above the impact of pyramidalization at nitrogen, as well as the fact that N,N-dimethoxyacetamide is predicted to protonate on the carbonyl oxygen in preference to nitrogen.     

Validation of a liquid chromatography-tandem mass spectrometry method for simultaneous quantification of N,N-dimethylacetamide and N-monomethylacetamide in pediatric plasma

N,N–dimethylacetamide is an excipient used in intravenous busulfan formulations, a drug used in hematopoietic stem cell transplantation conditioning. The aim of this study was to develop and validate a liquid chromatography-tandem mass spectrometry method for simultaneous quantification of N,N-dimethylacetamide, and its metabolite N-monomethylacetamide in plasma from children receiving busulfan. A 4 μl aliquot of patient plasma was extracted using 196 μl 50% methanol solution and quantified against calibrators prepared in the extraction solvent given negligible matrix effects across three concentrations. ⁹[H₂]-N,N-dimethylacetamide was used as an internal standard. Separation of N,N-dimethylacetamide and N-monomethylacetamide was achieved using a Kinetex EVO C18 stationary phase (100 mm × 2.1 mm × 2.6 μm) running an isocratic mobile phase of 30% methanol containing 0.1% formic acid at a flow of 0.2 ml/min over 3.0 min. The injection volume was 1 μl. Calibration curves for N,N-dimethylacetamide and N-monomethylacetamide were linear up to 1200 and 200 μg/L, respectively, with a lower limit of quantification 1 μg/L for both analytes. Calibrator accuracy and precision were within ± 10% of the test parameters across four concentration levels. Analytes were stable over 14 days at three different storage conditions. This method was successfully applied to measure N,N-dimethylacetamide and N-monomethylacetamide concentrations in a total of 1265 plasma samples from 77 children.     

Expression of membrane-associated proteins within single emulsion cell facsimiles

MreB is a structural membrane-associated protein which is one of the key components of the bacterial cytoskeleton. Although it plays an important role in shape maintenance of rod-like bacteria, the understanding of its mechanism of action is still not fully understood. This study shows how segmented flow and microdroplet technology can be used as a new tool for biological in vitro investigation of this protein. In this paper, we demonstrate cell-free expression in a single emulsion system to express red fluorescence protein (RFP) and MreB linked RFP (MreB-RFP). We follow the aggregation and localisation of the fusion protein MreB-RFP in this artificial cell-like environment. The expression of MreB-RFP in single emulsion droplets leads to the formation of micrometer-scale protein patches distributed at the water/oil interface.     

Anomalous reversal of C-h and C-d quenching efficiencies in luminescent praseodymium cryptates

A series of selectively deuterated praseodymium cryptates has been synthesized. Their luminescence lifetimes in solution range from 150 to 595 ns for the (1)D(2)?→?(3)F(4) transition. Global fitting of the nonradiative deactivation rate differences of the isotopologic C-(H/D) oscillators revealed that aromatic C-D overtones anomalously quench the luminescence more than C-H vibrations. This is explained by the dominance of Franck-Condon overlap factors that greatly favor C-D oscillators, which are in almost ideal resonance with the relevant energy gap (1)D(2)-(1)G(4) of praseodymium.     

ChemInform Abstract: The Ground-State Potential Energy Surface of Diazene

has been studied by using a complete active space MCSCF wave function generated by distributing eight electrons among eight orbitals.