Mammalian reovirus core protein micro 2 initiates at the first start codon and is acetylated

Mammalian reovirus is an enteric virus that contains a double-stranded RNA genome. The genome consists of ten RNA segments that encode eight structural and three non-structural proteins. The structural proteins form a double-layered structure. The innermost layer, called the core, consists of five proteins (lambda1, lambda2, lambda3, micro 2, and sigma2). Protein lambda3 is the RNA-dependent RNA polymerase (RdRp) and micro 2 is thought to be an RdRp cofactor. Translation of most reovirus proteins is known to commence at the first start codon. However, the translation initiation site of the viral core protein micro 2, encoded by the M1 RNA segment, has been in dispute. Although the theoretical molecular weight of micro 2 is 83 267 Da the actual molecular weight is unknown because micro 2 runs aberrantly in SDS-PAGE and has resisted characterization by Edman degradation, indicating that the amino terminus is post-translationally modified. In this study, we used proteolysis coupled with MALDI-Qq-TOFMS to determine that translation of micro 2 initiates at the first AUG codon, that its actual molecular weight approximates the theoretical value of 83 kDa, that the amino terminal methionine residue is removed, and that the next amino acid (alanine) is post-translationally acetylated.     

Computer simulation of liquid metal ion source optics

A numerical calculation of the electric field and current density distribution for a liquid metal ion (LMI) source has been carried out. If a field evaporation mechanism for ion formation is assumed an elongated Taylor cone shape emitter is required to account for the observed total currents. Trajectory calculations including the effect of uniform space charge have been carried out as a function of total current and particle mass. The predicted emission characteristics compare favorably with experimental results for Ga, however the homogeneous space charge model is unable to account for all of the experimentally observed increase in beam divergence with increasing mass and current.     

The combined use of SCF-MO calculations and experimental data in the evaluation of quadratic force fields: MOCIC potential functions for fluoroform,methyl acetylene,and methyl cyanide

A semiempirical method combining SCF-MO calculations and limited vibrational data has been employed to evaluate the completely general quadratic potential fields of fluoroform, methyl acetylene, and acetonitrile. MOCIC (molecular orbital constraint using interaction coordinates) potential fields are presented for gas phase molecules of intermediate size. Here general harmonic force fields or excellent approximations utilizing extensive experimental data are available as standards. A statistical evaluation of the interaction potentials shows that there is some improvement in going from MNDO or ab initio SCF-MO force fields to the MOCIC functions which reliably reproduce the off-diagonal vibrational potential constants in most instances. The MOCIC primary compliants are excellent approximations of their vibrational counterparts, as expected. Comparison of the calculated isotopic frequencies, Coriolis coupling constants, and centrifugal distortion constants for the SCF-MO, MOCIC, and vibrational spectroscopic potential fields with the corresponding experimental values also shows MOCICs reliability for molecules with many interaction potentials. There is substantial improvement in the calculated isotopic frequency shifts and centrifugal distortion constants in going from SCF-MO to MOCIC functions.     

A Computerized Operations Scheduling Model for the Reduction of Commercial Bank Float

The reduction in bank float requires that cheque processing procedures be upgraded in order to reduce the elapsed time between the receipt of a cheque and its presentation for collection at the bank upon which it is drawn. Traditionally, attempts to reduce float have focussed on the procedures for receiving checks and processing steps in preparation for clearing. Although the transporting of cheques from receiving locations to the processing location would most likely be the most significant factor in the elapsed time between receipt and eventual presentation for clearance, the float implications has largely been ignored in the development of transportation schedules in commercial banks. In attempting to maximize cheques processed, the timing of branch pickups should be based upon branch volume available and proof and transit processing capacity as well as travel time considerations. A heuristic model described in this paper represents the first methodology providing the opportunity for simultaneously evaluating these variables to develop schedules which offer opportunities for improvements in bank funds flow.     

Limitations of atom-centered dielectric functions in implicit solvent models

Many recent advances in Poisson-Boltzmann and generalized Born implicit solvent models have used atom-centered polynomial or Gaussian functions to define the boundary separating low and high dielectric regions. In contrast to the Lee and Richards molecular surface, atom-centered surfaces result in interatomic crevices and buried pockets of high dielectric which are too small for a solvent molecule to occupy. We show that these interstitial high dielectric regions are of significant magnitude in globular proteins, that they artificially increase solvation energies, and that they distort the free energy surface of nonbonded interactions. These results suggest that implicit solvent dielectric functions must exclude interstitial high dielectric regions in order to yield physically meaningful results.     

Novel search for heavy nu mixing from the beta+ decay of 38mK confined in an atom trap

A new technique, full neutrino momentum reconstruction, is used to set limits on the admixture of heavy neutrinos into the electron neutrino. We measure coincidences between nuclear recoils and positrons from the beta decay of trapped radioactive atoms and deduce the neutrino momentum. A search for peaks in the reconstructed recoil time-of-flight spectrum as a function of positron energy is performed. The admixture upper limits range from 4 x 10(-3) to 2 x 10(-2) and are the best direct limits for neutrinos (as opposed to antineutrinos) for the mass region of 0.7 to 3.5 MeV.     

Normal cones of monomial primes

We explicitly calculate the normal cones of all monomial primes which define the curves of the form , where . All of these normal cones are reduced and Cohen-Macaulay, and their reduction numbers are independent of the reduction. These monomial primes are new examples of integrally closed ideals for which the product with the maximal homogeneous ideal is also integrally closed.

Substantial use was made of the computer algebra packages Maple and Macaulay2.

     

MALDI-TOF-MS Directly Combined with TLC: A Review of the Current State

Thin-layer chromatography (TLC) is a widely used, fast and inexpensive method for separating complex mixtures. Unfortunately, the quality of achievable separation represents only one side. An additional problem is the unambiguous assignment of the obtained spots to defined compounds. Clear identification of spots is often not possible by common staining methods and comparison with a known reference compound. Therefore, further analytical techniques are mostly required for further structural elucidation. Mass spectrometry (MS) is a suitable method due to its high sensitivity. In particular, matrix-assisted laser desorption and ionization time-of-flight (MALDI-TOF) MS is a modern soft-ionization technique that may be easily combined with TLC. This review summarizes the so far available knowledge about direct TLC–MALDI combination and gives an overview about different molecule classes that have already been successfully analyzed by this approach. This review critically summarizes the capabilities and limitations of the direct MALDI–TLC combination and highlights in particular the problems related to sample preparation and instrumentation.