Structure alterations in microporous (Mg,Fe)2Al4Si5O18 crystals induced by energetic heavy-ion irradiation

The microporous framework structure of (Mg_1−xFe_x)₂Al₄Si₅O₁₈ (=cordierite) has been subject to a comparative study on the effect of structural alterations originating from exposure to high-energy heavy ions. Oriented samples (with x=0.061, 0.122, and 0.170) were irradiated with swift ¹²⁴Xe, ¹⁹⁷Au and ⁹⁶Ru ions with 11.1 MeV per nucleon energy and fluences of 1×10¹² and 1×10¹³ ions/cm². Irradiated and non-irradiated samples were investigated by means of X-ray diffraction, Mössbauer spectroscopy and optical absorption spectroscopy. Structural investigations reveal an essentially unchanged Al,Si ordering, which appears to be unaffected by irradiation. The most remarkable macroscopic change is the ion-beam induced colouration, which could be assigned to electronic charge transfer transitions involving the Fe cations. Mössbauer spectra indicate an increased amount of ^[4]Fe³⁺ for the irradiated sample. The most noticeable structural alteration concerns irradiation-induced dehydration of extra-framework H₂O, which is accompanied by a reduction in the molar volume by ∼0.2 vol%.     

Electronic structural dependence of the photophysical properties of fluorescent heteroditopic ligands - implications in designing molecular fluorescent indicators

Two fluorescent heteroditopic ligands (2a and 2b) for zinc ion were synthesized and studied. The efficiencies of two photophysical processes, intramolecular charge transfer (ICT) and photoinduced electron transfer (PET), determine the magnitudes of emission bathochromic shift and enhancement, respectively, when a heteroditopic ligand forms mono- or dizinc complexes. The electron-rich 2b is characterized by a high degree of ICT in the excited state with little propensity for PET, which is manifested in a large bathochromic shift of emission upon Zn(2+) coordination without enhancement in fluorescence quantum yield. The electron-poor 2a displays the opposite photophysical consequence where Zn(2+) binding results in greatly enhanced emission without significant spectral shift. The electronic structural effects on the relative efficiencies of ICT and PET in 2a and 2b as well as the impact of Zn(2+)-coordination are probed using experimental and computational approaches. This study reveals that the delicate balance between various photophysical pathways (e.g. ICT and PET) engineered in a heteroditopic ligand is sensitively dependent on the electronic structure of the ligand, i.e. whether the fluorophore is electron-rich or poor, whether it possesses a donor-acceptor type of structure, and where the metal binding occurs.     

A combinatorial chemistry approach to new materials for non‐linear optics. I. Five Schiff bases

A combinatorial chemistry approach has been used to synthesize an array of Schiff bases, five of which, namely N‐[(E,2E)‐3‐(4‐methoxy­phenyl)‐2‐propenyl­idene]‐3‐nitro­aniline, C₁₆H₁₄N₂O₃, (1a), N‐[(E,2E)‐3‐(4‐methoxy­phenyl)‐2‐propenyl­idene]‐4‐nitro­aniline, C₁₆H₁₄N₂O₃, (2a), N‐{(E,2E)‐3‐[4‐(di­methyl­amino)­phenyl]‐2‐propenyl­idene}‐3‐nitro­aniline, C₁₇H₁₇N₃O₂, (1b), N‐{(E,2E)‐3‐[4‐(di­methyl­amino)­phenyl]‐2‐propenyl­idene}‐4‐nitro­aniline, C₁₇H₁₇N₃O₂, (2b), and N‐{(E,2E)‐3‐[4‐(di­methyl­amino)­phenyl]‐2‐propenyl­idene}‐2‐methyl‐4‐nitro­aniline, C₁₈H₁₉N₃O₂, (3b), have been structurally characterized. A stack structure is observed for (1a) and (1b) in the crystal phase. Experimental and calculated molecular structures are discussed for these compounds which belong to a chemical class having potential applications as non‐linear optical materials.     

Pentavalent Organo-Vanadates as Transition State Analogues for Phosphoryl Transfer Reactions

Pentavalent organo-vanadates have been put forth as transition state analogues for a variety of phosphoryl transfer reactions. In particular, uridine 2',3'-cyclic vanadate (U>v) has been proposed to resemble the transition state during catalysis by ribonuclease A (RNase A). Here, this hypothesis is tested. Lys41 of RNase A is known to donate a hydrogen bond to a nonbridging phosphoryl oxygen in the transition state during catalysis. Site-directed mutagenesis and semisynthesis were used to create enzymes with natural and nonnatural amino acid residues at position 41. These variants differ by 10(5)-fold in their k(cat)/K(m) values for catalysis, but <40-fold in their K(i) values for inhibition of catalysis by U>v. Plots of logK(i) vs log(K(m)/k(cat)) for three distinct substrates [poly(cytidylic acid), uridine 3'-(p-nitrophenyl phosphate), and cytidine 2',3'-cyclic phosphate] have slopes that range from 0.25 and 0.36. These plots would have a slope of unity if U>v were a perfect transition state analogue. Values of K(i) for U>v correlate weakly with the equilibrium dissociation constant for the enzymic complexes with substrate or product, indicating that U>v bears some resemblance to the substrate and product as well as the transition state. Thus, U>v is a transition state analogue for RNase A, but only a marginal one. This finding indicates that a pentavalent organo-vanadate cannot necessarily be the basis for a rigorous analysis of the transition state for a phosphoryl transfer reaction.     

Molecular orientational motion in discotic liquid crystals

Abstract

The spectral densities of motion for the aromatic and chain deuterons of the discotic mesogen hexahexyoxytriphenylene (THE6) have been reported in the literature for a frequency of 46 MHz. Most spectral densities J_p (pω₀, 90°) have been obtained from samples consisting of a planar distribution of domains in which the directors were perpendicular to the magnetic field Limited data J_p (pω₀) have also been available from single-domain samples with the director aligned parallel to the magnetic field. We have applied the small-step rotational diffusion model of Nordio et al. to the data from the aromatic deuterons of THE6-ard in its uniaxial columnar D_ho phase, to describe the spinning (D _∥, rotational diffusion constant about the planar normal to the disc) and the tumbling (D?, rotational diffusion constant of the planar normal) motions of the molecular core. Although this model has been successfully used for rod-like nematic liquid crystals, its use has not been attempted for discotic liquid crystals. The model seems to indicate that molecular reorientation has slowed down in the D_ho phase, giving frequency dependence to the spectral densities. This can be explained by the high orientational order of the molecules. We are able to account for the four spectral densities J ₁ (ω₀), J ₁ (ω₀, 90°), J ₂ (2ω₀) and J ₂(2ω₀, 90°) with a calculated ratio D∥/D? of about 1. This is quite different from that of rodlike liquid crystals.     

The Design of Ion Selective Macrocycles and the Solid-Phase Extraction of Ions Using Molecular Recognition Technology: A Synopsis

Abstract

We have combined organic synthesis and the study of cation complexation properties of the crown ethers in an effort to design and prepare macrocyclic ligands that will selectively bind specific cations.^1–3 The bis-phenol-containing diazacrown ethers allow a great number of possibilities for designing ion selectivity into macro-cyclic ligands. In these cases, the macrocyclic ligand can be varied as can the type and position of attachment of the phenolic group. Any of these variations can have profound effects on complexation properties. For example, ligand 1 (see Figure 1), where two 5-chloro-8-hydroxy-quinoline (CHQ) groups are attached through their positions 7, is selective for Mg²⁺ over other alkali and alkaline earth metal ions (see Table I).⁴ On the other hand, ligand 2, where the two CHQ groups are attached through their positions 2, exhibits remarkable selectivity for K⁺ and Ba²⁺ over all other metal ions studied. The chemical shifts of the CHQ protons in the ¹H NMR spectra of K⁺- and Ba²⁺- complexes with 2 shift significantly upfield in relation to the free ligand. These shifts are indicative of an overlap of the two CHQ substituents. Indeed, the crystal structure of the Ba²⁺-2 complex shows that Ba²⁺ is in the center of a pseudo-cryptand with the diazacrown forming two arms and the two overlapping CHQ groups forming the third.^4,5 This pseudo-cryptand formation accounts for the fact that the K⁺-2 and Ba²⁺-2 complexes are so stable in comparison to complexes of 2 with the other alkali and alkaline earth cations.     

Electronic spectroscopy and computational studies of glutathionylco(III)balamin

We have studied glutathionylcobalamin (GS-Cbl) by optical spectroscopy and with density functional theory (DFT) and time-dependent DFT (TD-DFT) electronic structure methods of truncated geometric models. We examined the geometric structure of the models by comparison of DFT calculations with recent high-resolution experimental X-ray structure data ( Hannibal, L. et al. Inorg. Chem. 2010, 49, 9921) for GS-Cbl, and we examined the TD-DFT excitation simulations by comparison of the models with measured optical spectra. The calculations employed the B3LYP hybrid functional and the nonhybrid BP86 functional in both vacuum and water (conductor polarized continuum model (cpcm)) with the 6-311G(d,p) basis set. The optimized geometric structure calculations for six truncated models were made by varying the chemical structure, solvent model, and the two DFT functionals. All showed similar geometry. Charge decomposition analysis (CDA) and extended charge decomposition analysis (ECDA), especially with BP86 shows the similar charge transfer nature of the Co-S bond in GS-Cbl and the Co-C bond in CH(3)Cbl. Mayer and Wiberg bond orders illustrate the similar covalent nature of the two bonds. Finally, absolute optical spectral simulation calculations were compared with the experimental UV-visible extinction spectrum and the electronic circular dichroism (ECD) differential extinction spectrum. The BP86 method shows more spectral features, and the best fit was found for a GS-Cbl model with 5,6-dimethylbenzimidazole at the BP86/6-311G(d,p) level with a water cpcm solvent model. The excited state transitions were investigated with Martin's natural transition orbitals (NTOs). The BP86 calculations also showed π bonding interactions between Co and the axial S of the GS- ligand in the molecular orbitals (MOs) and NTOs.     

Positive cooperativity in the template-directed synthesis of monodisperse macromolecules

Two series of oligorotaxanes R and R' that contain -CH(2)NH(2)(+)CH(2)- recognition sites in their dumbbell components have been synthesized employing template-directed protocols. [24]Crown-8 rings self-assemble by a clipping strategy around each and every recognition site using equimolar amounts of 2,6-pyridinedicarboxaldehyde and tetraethyleneglycol bis(2-aminophenyl) ether to efficiently provide up to a [20]rotaxane. In the R series, the -NH(2)(+)- recognition sites are separated by trismethylene bridges, whereas in the R' series the spacers are p-phenylene linkers. The underpinning idea here is that in the former series, the recognition sites are strategically positioned 3.5 ? apart from one another so as to facilitate efficient [π···π] stacking between the aromatic residues in contiguous rings in the rotaxanes and consequently, a discrete rigid and rod-like conformation is realized; these noncovalent interactions are absent in the latter series rendering them conformationally flexible/nondiscrete. Although in the R' series, the [3]-, [4]-, [8]-, and [12]rotaxanes were isolated after reaction times of <5-30 min in yields of 72-85%, in the R series, the [3]-, [4]-, [5]-, [8]-, [12]-, [16]-, and [20]rotaxanes were isolated in <5 min to 14 h in 88-98% yields. It follows that while in the R' series the higher order oligorotaxanes are formed in lower yields more rapidly, in the R series, the higher order oligorotaxanes are formed in higher yields more slowly. In the R series, the high percentage yields are sustained throughout, despite the fact that up to 39 components are participating in the template-directed self-assembly process. Simple arithmetic reveals that the conversion efficiency for each imine bond formation peaks at 99.9% in the R series and 99.3% in the R' series. This maintenance of reaction efficiency in the R series can be ascribed to positive cooperativity, that is, when one ring is formed it aids and abets the formation of subsequent rings presumably because of stabilizing extended [π···π] stacking interactions between the arene units. Experiments have been performed wherein the dumbbell is starved of the macrocyclic components, and up to five times more of the fully saturated rotaxane is formed than is predicted based on a purely statistical outcome, providing a clear indication that positive cooperativity is operative. Moreover, it would appear that as the R series is traversed from the [3]- to the [4]- to the [5]rotaxane, the cooperativity becomes increasingly positive. This kind of cooperative behavior is not observed for the analogous oligorotaxanes in the R' series. The conventional bevy of analytical techniques (e.g., HR-MS (ESI) and both (1)H and (13)C NMR spectroscopy) help establish the fact that all the oligorotaxanes are pure and monodisperse. Evidence of efficient [π···π] stacking between contiguous arene units in the rings in the R series is revealed by (1)H NMR spectroscopy. Ion-mobility mass spectrometry performed on the R and R' series yielded the collisional cross sections (CCSs), confirming the rigidity of the R oligorotaxanes and the flexibility of the R' ones. The extended [π···π] stacking interactions are found to be present in the solid-state structures of the [3]- and [4]rotaxanes in the R series and also on the basis of molecular mechanics calculations performed on the entire series of oligomers. The collective data presented herein supports our original design in that the extended [π···π] stacking between contiguous arene units in the rings of the R series of oligorotaxanes facilitate an essentially rigid rod-like conformation with evidence that positive cooperativity improves the efficiency of their formation. This situation stands in sharp contrast to the conformationally flexible R' series where the oligorotaxanes form with no cooperativity.