Evaluation of two chelators for labelling a PNA monomer with the fac-[Tc(CO)3] moiety

A PNA monomer containing thymine as nucleobase (1) was synthesized, characterized and coupled to the pyrazolyl containing ligand 3,5-Me₂pz(CH₂)₂N((CH₂)₃COOH)(CH₂)₂NHBoc (2) and to a modified cysteine S-(carboxymethyl-pentafluorphenyl)-N-[(trifluor)carbonyl]-l-cysteine methyl ester (3) yielding the bifunctional chelators 6 and 7, respectively. Reactions of 6 and 7 with the Re(I) tricarbonyl starting material [Re(CO)₃(H₂O)₃]Br afforded the complexes fac-[Re(CO)₃(κ³-6)]⁺ (8) and fac-[Re(CO)₃(κ³-7)] (9), respectively. The identity of 8 and 9 has been established based on IR spectroscopy, elemental analysis, ESI-MS spectrometry and HPLC. The multinuclear NMR spectroscopy (¹H, ¹³C, g-COSY, g-HSQC) has also been very informative in the case of complex 8, showing the presence of rotamers in solution. For 9 the NMR spectrum was too complex due to the presence of rotamers and diastereoisomers. The radioactive congeners of complexes 8 and 9, fac-[^99mTc(CO)₃(κ³-6)]⁺ (8a) and fac-[^99mTc(CO)³(κ³-7)] (9a), have been prepared by reacting the precursor fac-[^99mTc(CO)₃(H₂O)₃]⁺ with the corresponding ligands being their identity established by comparing their HPLC chromatograms with the HPLC of the rhenium surrogates.     

Double diels-alder strategies to soluble 2,9- and 2,9,6,13-tetraethynylpentacenes, photolytic [4 + 4] cycloadditions, and pentacene crystal packing

Four new classes of organic solvent soluble ethynylpentacene derivatives (2,9-, 2,10-, 2,6,9,13-, 2,6,10,13-) have been prepared by complementary, versatile, double Diels-Alder strategies. Functional groups on the A, C, and E rings can be manipulated to increase the solubility, modulate the electronics, and alter the solid-state packing. Cycloaddition reactions with diene 2 and 1,4,5,8-anthradiquinone (3) or ortho-quinodimethane 19 with 1-butyl-3-methylimidazolim iodide (18) as the iodide source (a significant improvement over NaI) and benzoquinone (20) followed by in situ aromatization afforded the quinones 4, 5, 21, and 22, respectively. For the 2,9- and 2,10- families, a one-pot desilylation/triflation was developed. Palladium(0) coupling and reductive aromatization afforded 2,9-di(triisopropylsilylethynyl)pentacene (10) and 2,10-di(triisopropylsilylethynyl)pentacene (11), respectively. Photodimerization of these pentacenes afforded the air-stable [4 + 4] cycloaddition pentacene precursors (tetrakisnaphthotricyclo[4.2.2.22,5]dodecanes, 12-15). Thermal cycloreversion of the dimers ( approximately 13 J/g, approximately 4 kcal/mol) produces the parent pentacenes (10 or 11). The tetrasubstituted family utilized a parallel route with extra versatility as the timing of the Grignard and palladium(0) coupling step may be varied depending upon the functional group combinations desired. The subsequent reactions provided the tetraethynylpentacenes 28-30, 33-35 (para-isomers), and 38 (meta-isomer). X-ray crystallography analysis of 28, 29, and 33 revealed various pi-pi stacked packing motifs that differ from the unfavorable herringbone pattern of pentacene.     

Metal-dependent self-assembly of a microbial surfactant

Small-angle neutron scattering (SANS), cryogenic transmission electron microscopy (cryo-TEM), and dynamic light scattering (DLS) were used to study the metal-dependent phase behavior of microbially produced surfactants-marinobactins B, D, and E (MB, MD, and ME). Marinobactins A-E are siderophores that facilitate Fe(III) acquisition by the source bacterium through the coordination of Fe(III) by the peptidic headgroup. All of the marinobactins have the same six amino acid headgroup but differ in the length and saturation of the monoalkyl fatty acid tail. Fe(III) coordinated to ME (Fe(III)-ME) was found to form micelles with a diameter of approximately 3.5 nm that underwent a supramolecular transformation to produce a monodisperse population of vesicles with an average diameter ranging from approximately 90 to 190 nm upon addition of Cd(II), Zn(II), or La(III). SANS profiles of the transition-metal-induced phase exhibit a Bragg peak at QB approximately 0.11-0.12 A-1 and were fit to a SANS model for multilamellar vesicles that have an interbilayer repeat distance of 2pi/QB approximately 5.6-5.0 nm. Cryo-TEM images of the Zn(II)-induced phase reveals the presence of approximately 100 nm diameter approximately spherical aggregates of uniform electron density. The temperature dependence of the Zn(II)-induced transformation was also investigated as a function of the length and degree of unsaturation of the Fe(III)-marinobactin fatty acid tail. The Cd(II)-, Zn(II)-, and La(III)-induced phase changes have features that are similar to those of the previously reported Fe(III)-induced micelle-to-vesicle transition, and this observation has opened questions regarding the role that Cd(II) and Zn(II) may play in bacterial iron uptake.     

Surface properties of "jellyfish": Langmuir monolayer and Langmuir-Blodgett film studies of recombinant aequorin

In this paper, we studied the surface properties of recombinant aequorin at the air-water interface. Using the Langmuir monolayer technique, the surface properties of aequorin were studied, including the surface pressure and surface potential-area isotherms, compression-decompression cycles, and stability on Trizma Base (Tris/HCl) buffer at pH 7.6. The results showed that aequorin formed a stable Langmuir monolayer and the surface pressure-area isotherms were dependent on both pH and ionic strength. At a pH higher or lower than 7.6, the limiting molecular area decreased. The circular dichroism (CD) spectra of aequorin in aqueous solutions explained this result: when the pH was higher than 7.6, the alpha-helix conformation changed to unordered structures, whereas at a pH lower than 7.6, the alpha-helix conformation changed to beta-sheet. The addition of calcium chloride to the Tris/HCl buffer subphase (pH 7.6) caused an increase of the limiting molecular area of the aequorin Langmuir monolayer. The fluorescence spectra of a Langmuir-Blodgett (LB) film of aequorin in the presence of calcium chloride indicated that the aequorin transformed to the apoaequorin.     

A computational study of the hydrodynamically assisted organization of DNA-functionalized colloids in 2D

We study computationally the self-organization of DNA-functionalized colloidal particles confined to two dimensions and subjected to a linear shear force. We show that hydrodynamic forces allow a more thorough sampling of phase space than thermal or Brownian forces alone. Two particle types are present in each of our dynamic simulations each signifying its own specific oligonucleotide sequence grafted to the particle surface: A-type and B-type. Particles are modeled as interacting via a type-specific DNA attraction where unlike-types have affinities for each other while like-types do not. The particles are small enough to feel Brownian motion while the shear adds motion to the particles. We find the formation of lines of A-type and B-type particles in simulations with an imposed shear. Simulations without imposed shear form a frustrated network with little or no linear order. An orientational distribution function, g2(r), quantifies the degree of linear order. A phase diagram is constructed, finding a linear dependence of the minimum DNA force necessary for line formation on the dimensionless shear rate. A force analysis performed on the structures shows that the lines orient perpendicular to the axis of the elongation component of the shear because it is this orientation that allows the DNA attraction to resist the shear.     

A photodimerization approach to crosslink and functionalize microgels

Microgels were prepared within reverse micelles via photocrosslinking. Gelation resulted from the [2 + 2] photodimerization reaction of nitrocinnamoyl (NC) groups on multi-arm polyethylene glycol (PEG) or gelatin. Because of the potential for biomedical and chemical applications, immobilization capacity within the microgels was investigated. Quantum dots (QDs), for example, share a similar size scale with proteins and can be physically trapped within the microgels. In addition, the optoelectronic properties of QDs could be utilized for analytical, imaging, and therapeutic purposes. Small molecules and recognition sequences (e.g. biotin) can also be covalently immobilized within the microgel networks through the photodimerization reaction. In the presence of biotin-PEG-NC, the resulting microgels added to streptavidin-coated plates. The microgel properties such as biodegradability and degree of swelling may be engineered for particular applications including targeted monitoring and controlled drug delivery systems.     

Use of 1,10-phenanthroline in diiron dithiolate derivatives related to the [Fe-Fe] hydrogenase active site

Treatment of [Fe(2)(micro-pdt)(CO)(6)] (pdt = S(CH(2))(3)S) with 1,10-phenanthroline (phen) in refluxing toluene affords the asymmetric complex [Fe(2)(micro-pdt)(CO)(4)(phen)] (1); the protonation of with HBF(4).OEt(2) in CD(2)Cl(2) at 203 K has been monitored by (1)H NMR.     

Combinatorial synthesis and hydrogenation of Mg/Al libraries prepared by electron beam physical vapor deposition

We have grown thin film libraries of the Mg-Al system using a high-throughput synthesis methodology that combines the sequential deposition of pure elements (Mg and Al) by an electron-beam (e-beam) evaporation technique and the use of a special set of moving shadow masks. This novel mask has been designed to simultaneously prepare four identical arrays of different compositions that will permit the characterization of the same library after several treatments. Wavelength dispersive spectroscopy (WDS) and micro-X-ray diffraction have been used as high-throughput screening techniques for the determination of the composition and structure of every member of the library in the as-deposited state and after hydrogenation at 1 atm of H2 during 24 h at three different temperatures: 60, 80, and 110 degrees C. We have analyzed the influence of the Mg-Al ratio on the hydrogenation of magnesium, as well as on the appearance of complex hydride phases. We have also found that aluminum can act as a catalyzer for the hydrogenation reaction of magnesium.     

Separation of components from impulses in reassigned spectrograms

Two computational methods for pruning a reassigned spectrogram to show only quasisinusoidal components, or only impulses, or both, are presented mathematically and provided with step-by-step algorithms. Both methods compute the second-order mixed partial derivative of the short-time Fourier transform phase, and rely on the conditions that components and impulses are each well-represented by reassigned spectrographic points possessing particular values of this derivative. This use of the mixed second-order derivative was introduced by Nelson [J. Acoust. Soc. Am. 110, 2575-2592 (2001)] but here our goals are to completely describe the computation of this derivative in a way that highlights the relations to the two most influential methods of computing a reassigned spectrogram, and also to demonstrate the utility of this technique for plotting spectrograms showing line components or impulses while excluding most other points. When applied to speech signals, vocal tract resonances (formants) or glottal pulsations can be effectively isolated in expanded views of the phonation process.     

Hearing loss from interrupted, intermittent, and time varying Gaussian noise exposures: the applicability of the equal energy hypothesis

Eight groups of chinchillas (N=74) were exposed to various equivalent energy [100 or 106 dB(A) sound pressure level (SPL)] noise exposure paradigms. Six groups received an interrupted, intermittent, time varying (IITV) Gaussian noise exposure that lasted 8 h/d, 5 d/week for 3 weeks. The exposures modeled an idealized workweek. At each level, three different temporal patterns of Gaussian IITV noise were used. The 100 dB(A) IITV exposure had a dB range of 90-108 dB SPL while the range of the 106 dB(A) IITV exposure was 80-115 dB SPL. Two reference groups were exposed to a uniform 100 or 106 dB(A) SPL noise, 24 h/d for 5 days. Each reference group and the three corresponding IITV groups comprised a set of equivalent energy exposures. Evoked potentials were used to estimate hearing thresholds and surface preparation histology quantified sensory cell populations. All six groups exposed to the IITV noise showed threshold toughening effects of up to 40 dB. All IITV exposures produced hearing and sensory cell loss that was similar to their respective equivalent energy reference group. These results indicate that for Gaussian noise the equal energy hypothesis for noise-induced hearing loss is an acceptable unifying principle.