Stochastic dynamics of a Josephson junction threshold detector

We generalize the stochastic path integral formalism by considering Hamiltonian dynamics in the presence of general Markovian noise. Kramers' solution of the activation rate for escape over a barrier is generalized for non-Gaussian driving noise in both the overdamped and underdamped limit. We apply our general results to a Josephson junction detector measuring the electron counting statistics of a mesoscopic conductor. The activation rate dependence on the third current cumulant includes an additional term originating from the backaction of the measurement circuit.     

Dielectric microconcentrators for efficiency enhancement in concentrator solar cells

Metal fingers typically cover more than 10% of the active area of concentrator solar cells. Microfabricated dielectric optical designs that can completely eliminate front contact shading losses are explored. Essentially no microconcentrator optical losses need be incurred, series resistance losses can be reduced, and net efficiency gains of roughly 15% (relative) are realistic.     

A Remark on the Essential Spectra of Toeplitz Operators with Bounded Measurable Coefficients

We establish a sufficient condition for a point to belong to the essential spectrum of a Toeplitz operator with a bounded measurable coefficient. This condition uses geometric information on the cluster values of the coefficient.     

Tamm oscillations in semi-infinite nonlinear waveguide arrays

We demonstrate the existence of nonlinear Tamm oscillations at the interface between a substrate and a one-dimensional waveguide array with either cubic or saturable, self-focusing or self-defocusing nonlinearity. Light is trapped in the vicinity of the array boundary due to the interplay between the repulsive edge potential and Bragg reflection inside the array. In the special case when this potential is linear these oscillations reduce themselves to surface Bloch oscillations.     

Scaling properties and entropy of long-range correlated time series

We calculate the Shannon entropy of a time series by using the probability density functions of the characteristic sizes of the long-range correlated clusters introduced in [A. Carbone, G. Castelli, H.E. Stanley, Phys. Rev. E 69 (2004) 026105]. We define three different measures of the entropy related, respectively, to the length, the duration and the area of the clusters. For all the three cases, the entropy increases as the logarithm of a power of the size with exponents equal to the fractal dimension of the cluster length, duration and area, respectively.     

Design, synthesis, and validation of a branched flexible linker for bioactive peptides

A branched flexible linker that incorporates a fluorescent dansyl moiety was synthesized and used to connect two high affinity NDP-alpha-MSH ligands or two low affinity MSH(4) ligands. The linker was incorporated into the conjugate by solid-phase synthesis. In vitro biological evaluations showed that potency of binding to the human melanocortin 4 receptor was not diminished for linker-ligand combinations relative to the corresponding ligand alone.     

Color of illumination during growth affects LHCII chiral macroaggregates in pea plant leaves

To determine whether the color of illumination under which plants are grown, affects the structure of photosynthetic antennae, pea plants were grown under either blue-enriched, red-enriched, or white light. Carotenoid content of isolated chloroplasts was found to be insensitive to the color of illumination during growth, while chlorophyll a/b ratio in chloroplasts isolated from young illuminated leaves showed susceptibility to color. Color of illumination affects the LHCII chiral macroaggregates in intact leaves and isolated chloroplasts, providing light-induced alteration of the handedness of the LHCII chiral macroaggregate, as measured with circular dichroism and circularly polarized luminescence. The susceptibility of handedness to current illumination (red light excitation of chlorophyll fluorescence) is dependent on the color under which the plants were grown, and was maximal for the red-enriched illumination. We propose the existence of a long-term (growth period) color memory, which influences the susceptibility of the handedness of LHCII chiral macroaggregates to current light.     

Enhanced efficiency of direct-space structure solution from powder X-ray diffraction data in the case of conformationally flexible molecules

A strategy is reported for assessing the feasibility of molecular conformations within direct-space structure-solution calculations of organic molecular crystal structures from powder X-ray diffraction data, focusing in particular on the genetic algorithm technique for structure solution in which fitness is defined as a function of the whole-profile figure-of-merit Rwp. The strategy employs a readily computed distance-based function to assess the feasibility of the molecular conformation in each trial structure generated in the genetic algorithm calculation, and structures considered to have low-feasibility conformations are penalized within the evolutionary process. The strategy is shown to lead to significant improvements in the success rate of structure-solution calculations in the case of flexible molecules with a significant number of conformational degrees of freedom.     

Nearest-neighbor nonparametric method for estimating the configurational entropy of complex molecules

A method for estimating the configurational (i.e., non-kinetic) part of the entropy of internal motion in complex molecules is introduced that does not assume any particular parametric form for the underlying probability density function. It is based on the nearest-neighbor (NN) distances of the points of a sample of internal molecular coordinates obtained by a computer simulation of a given molecule. As the method does not make any assumptions about the underlying potential energy function, it accounts fully for any anharmonicity of internal molecular motion. It provides an asymptotically unbiased and consistent estimate of the configurational part of the entropy of the internal degrees of freedom of the molecule. The NN method is illustrated by estimating the configurational entropy of internal rotation of capsaicin and two stereoisomers of tartaric acid, and by providing a much closer upper bound on the configurational entropy of internal rotation of a pentapeptide molecule than that obtained by the standard quasi-harmonic method. As a measure of dependence between any two internal molecular coordinates, a general coefficient of association based on the information-theoretic quantity of mutual information is proposed. Using NN estimates of this measure, statistical clustering procedures can be employed to group the coordinates into clusters of manageable dimensions and characterized by minimal dependence between coordinates belonging to different clusters.