Photophysics of Schiff Bases: Theoretical Study of Salicylidene Methylamine

The proton‐transfer reaction in a model aromatic Schiff base, salicylidene methylamine (SMA), in the ground and in the lowest electronically‐excited singlet states, is theoretically analyzed with the aid of second‐order approximate coupled‐cluster model CC2, time‐dependent density functional theory (TD‐DFT) using the Becke, three‐parameter Lee–Yang–Parr (B3LYP) functional, and complete active space perturbation theory CASPT2 electronic structure methods. Computed vertical‐absorption spectra for the stable ground‐state isomers of SMA fully confirm the photochromism of SMA. The potential‐energy profiles of the ground and the lowest excited singlet state are calculated and four photophysically relevant isomeric forms of SMA; α, β, γ, and δ are discussed. The calculations indicate two S₁/S₀ conical intersections which provide non‐adiabatic gates for a radiationless decay to the ground state. The photophysical scheme which emerges from the theoretical study is related to recent experimental results obtained for SMA and its derivatives in the low‐temperature argon matrices (J. Grzegorzek, A. Filarowski, Z. Mielke, Phys. Chem. Chem. Phys. 2011 , 13, 16596–16605). Our results suggest that aromatic Schiff bases are potential candidates for optically driven molecular switches.     

Optical manipulation of particle ensembles in air

We demonstrate that airborne light-absorbing particles can be photophoretically trapped and moved inside an optical lattice formed by multiple-beam interference. This technique allows simultaneous three-dimensional manipulation of multiple micro-objects in gases.     

A highly selective chemodosimeter for the rapid detection of Hg2+ ions in aqueous media

A novel S,S′-diallyl carbohydrazonodithioate derivative 3 of rhodamine B hydrazone was developed as a chemodosimeter for selective detection of mercury ions based on Hg²⁺ promoted cyclization. The allyl groups of 3 play a key role in the binding and selection of Hg²⁺ ions. The probe responds selectively to Hg²⁺ over various other competitive cations with marked chromo- and fluorogenic changes. The formation of stable oxadiazole derivative 8 was a strong driving force for this high selectivity. Practically, this probe is more promising because of the remarkable high selectivity, faster response, low detection limit, and aqueous solubility of 3.     

Calculation of sequence‐dependent free energies of hydration of dipeptides formed by alanine and glycine

The relative free energies of hydration of the dipeptides glycylalanine and alanyl‐glycine in their naturally occurring form have been calculated both for the zwitterionic and protonated species. Emphasis was laid on comparisons between the conventional cutoff method and the Particle Mesh Ewald method to account for possible differences in electrostatic contributions to the free energy. Furthermore, the convergence behavior of the total free energy and its individual contributions were examined. The results, obtained by means of the thermodynamic integration technique as implemented in the free energy module of the AMBER program suite, suggest that in aqueous solution glycylalanine is more stable than alanylglycine by 2.7 kcal/mol in the zwitterionic form and by 3.5 kcal/mol in the protonated form. © 2001 John Wiley & Sons, Inc. J Comput Chem 22: 846–860, 2001     

A Combined QM/MM Molecular Dynamics Simulations Study of Nitrate Anion (NO3‐) in Aqueous Solution.

ChemInform is a weekly Abstracting Service, delivering concise information at a glance that was extracted from about 200 leading journals. To access a ChemInform Abstract, please click on HTML or PDF.     

Measurement of the dynamics of the compression of high aspect-ratio shell targets in the “Delfin-1” installation

With the help of a specific diagnostic system designed for the “DELFIN-1” installation we have measured implosion velocities ? 250 km/s, which are record values for experiments on compression at sufficiently high hydrodynamic efficiency of ablative shell targets. An empirical scaling is shown to agree well with the measured compression velocities.     

Shell-target laser-plasma images in the light of intrinsic and backlit X radiation

Results are presented of calculation of x-ray plasma images of glass shell targets with diagnostic additives Na, K, and Ca in the light of the intrinsic radiation of the resonance lines of H and He ions with Z_n = 8, ii, 14, and 20, and also in the light of cw radiation in the wavelength range = 1-300 Å. The calculation results are compared with laser-plasma images obtained in experiments with the Del'fin-l thermonuclear facility. The temperature and density of the plasma, the rate of corona expansion, the target mass ablation rate, and the hydrodynamic coefficient of laser-energy transfer into kinetic energy of the ablating shell are determined. The plasma images obtained by backlighting the shell target with an auxiliary x-ray source are analyzed with account taken of the radiation refraction. The required energy, temporal, and spectral characteristics of the auxiliary source are determined.Laser-Plasma Laboratory, Lebedev Physics Institute. Translated from Preprint No. 70 of the Lebedev Physics Institute, Academy of Sciences of the USSR, Moscow, 1989.     

New Insights into the Jahn–Teller Effect through ab initio Quantum-Mechanical/Molecular-Mechanical Molecular Dynamics Simulations of CuII in Water

The Cu^II hydration shell structure has been studied by means of classical molecular dynamics (MD) simulations including three-body corrections and hybrid quantum-mechanical/molecular-mechanical (QM/MM) molecular dynamics (MD) simulations at the Hartree–Fock level. The copper(II ) ion is found to be six-fold coordinated and [Cu(H₂O)₆]²⁺ exhibits a distorted octahedral structure. The QM/MM MD approach reproduces correctly the experimentally observed Jahn–Teller effect but exhibits faster inversions (<200 fs) and a more complex behaviour than expected from experimental data. The dynamic Jahn–Teller effect causes the high lability of [Cu(H₂O)₆]²⁺ with a ligand-exchange rate constant some orders of magnitude higher than its neighbouring ions Ni^II and Zn^II. Nevertheless, no first-shell water exchange occurred during a 30-ps simulation. The structure of the hydrated ion is discussed in terms of radial distribution functions, coordination numbers, and various angular distributions and the dynamical properties as librational and vibrational motions and reorientational times were evaluated, which lead to detailed information about the first hydration shell. Second-shell water-exchange processes could be observed within the simulation time scale and yielded a mean ligand residence time of ≈20 ps.     

Relative free energies of binding to thymidylate synthase of 2- and/or 4-thio and/or 5-fluoro analogues of dUMP

Free energy perturbation calculations have been applied to evaluate the relative free energies of binding of 2'-deoxyuridine-5'-monophosphate (dUMP) and its 2- and/or 4-thio and/or 5-fluoro analogues to the wild-type E. coli thymidylate synthase (ecTS). The results accurately reproduce experimentally measured differences in the free energy of binding of dUMP versus 5-fluoro-dUMP to thymidylate synthase. They indicate that preferred binding of dUMP compared to 5-fluoro-dUMP in the binary complex is equally related to (i) more favorable electrostatic interactions of the dUMP molecule in the enzyme active site, and (ii) its less favorable solvation in the aqueous solution. The relative free energies of binding in the binary complex show moderate and qualitatively indistinguishable discrimination among the studied fluorinated and non-fluorinated 2- and/or 4-thio analogues of dUMP. The binding free energies of monothio analogues of dUMP and 5-fluoro-dUMP correspond quite well with experimentally measured activities of these nucleotides in the thymidylate synthase reaction. On the other hand, the binding free energies of both dithio analogues, 2,4-dithio-dUMP and 2,4-dithio-FdUMP, show lack of such correlation. The latter suggests that very low activities of the dithio analogues of dUMP and 5-fluoro-dUMP may relate more to the covalent reaction of these nucleotides within the ternary complex with TS and 5,10-methylenetetrahydrofolate, than to their pre-covalent binding. We speculate that a lack of substrate activity of 2,4-dithio-dUMP is related to the high aromaticity of its pyrimidine ring that prevents the Michael addition of the active site cysteine thiol to the pyrimidine C6 atom. A stronger affinity of the fluorinated analogues of dUMP to thymidylate synthase, compared to the non-fluorinated congeners, results from the fluorine substituent producing a local strain in the C6 region in the pyrimidine ring, thus sensitizing C6 to the Michael addition of the cysteine thiol.     

Metal complex formation with dicarbonyl-ligands. Calculations on glyoxal complexes with alkali and alkaline earth metal ions

Ab initio MO SCF calculations on the complexes of Li, Na, K, Be, Mg and Ca ions with glyoxal have been performed. These calculations represent the first part of a series of theoretical investigations on the dependence of complex formation properties of ligands containing two carbonyl groups on the structure of the cordinative center. Special attention has been paid to the chelate effect, which is found to increase with increasing atomic number within the series of ions. The calculated values are compared with our recent data obtained from UV spectroscopy of ion complexes with dicarbonyl ligands.