Protein recognition using synthetic surface-targeted agents

The design of synthetic agents to disrupt protein-protein interactions has received relatively little attention in recent years. In this review we describe strategies for targeting different types of protein surfaces using mimetics of protein secondary or tertiary structure. In this way strong and selective binding to a protein surface has be achieved and disruption of clinically important protein-protein interactions has been demonstrated in models of human disease.     

BSE control: detection of gelatine-derived peptides in animal feed by mass spectrometry

The epidemic of bovine spongiform encephalopathy (BSE) is thought to have resulted from feeding scrapie-infected sheep to cattle. This has led to a ban of feeding animals with "processed animal protein"(PAP). We report a novel approach for the mass spectrometric detection of PAP contamination in animal feedstuffs by detecting gelatine, a derivative of the major animal protein collagen. A method was developed to hydrolyse gelatine standards with hydrochloric acid, followed by detection of the derived hydrolytic peptides at m/z 828, 915, 957 and 1044 by matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOF MS) and liquid chromatography electrospray ionisation mass spectrometry (LC-ESI-MS-MS). The marker peptides can be detected at concentrations of 100 ng ml(-1) gelatine in water with MALDI. The procedure was adapted to obtain a suitable peptide map of gelatine extracted from spiked feed. The ratio of signal area of the gelatine-derived peptide at m/z 1044 to the internal standard at m/z 556 is shown to relate to the total amount of gelatine present in the sample.     

Directed denaturation: room temperature and stoichiometric unfolding of cytochrome C by a metalloporphyrin dimer

Using circular dichroism, UV-vis, and trypsin proteolysis, we have shown how a metalloporphyrin dimer induces the unfolding of a protein, cytochrome c, under physiologically relevant conditions and accelerates its rate of proteolytic degradation.     

Steric interactions between finite objects and end-grafted polymer chains: a two-dimensional mean-field analysis

We examine the usefulness of a two-dimensional self-consistent mean-field theory for predicting polymer-induced forces between a finite object and a surface. The predictions are compared with scaling results for the compression of a single, end-grafted chain by a disk and for the compression of a brush with an athermal wall. For the former, the mean-field predictions agree with scaling theory and, in addition, provide the necessary prefactor in the scaling expressions for the Helmholtz potential and force of compression. For the brush, the mean-field results agree with the Alexander-de Gennes scaling result at moderate compressions and also provide an analytical expression for the force without any unknown parameters. We also use the mean-field theory to examine the interaction of a model bacterium with a planar substrate and show that steric interactions due to a single polymer chain alone can dominate van der Waals attraction under typical practical conditions and thus prevent bacterial adhesion to the surface.     

Vibrational dynamics of the organometallic compound triarylorganoantimony (V) SbPh<Subscript>3</Subscript>[O<Subscript>2</Subscript>CC(OH)Ph<Subscript>2</Subscript>]<Subscript>2</Subscript>

A complete normal coordinate analysis was performed for five-coordinate non-rigid triarylantimony diester SbPh₃(O₂CR)₂, known to be a bioactive molecule, using Wilson G-F matrix method and Urey Bradley force field. The study of vibrational dynamics was performed using the concept of group frequencies and band intensities.      

Interferometric key readable security holograms with secrete-codes

A new method is described to create secrete-codes in the security holograms for enhancing their anti-counterfeiting characteristics. To imitate these codes is difficult as pure phase objects having complex phase distribution function are used to modulate the object beam that is recorded in conjunction with an encoded interferometric reference beam derived from a key hologram. Lloyd’s folding mirror interferometer is used to convert phase variations of the reconstructed wave-front into an intensity pattern for hologram authenticity verification. Creating the secrete-codes through an interferometric reference beam from the key hologram facilitates a multi-stage authenticity verification as well as easy repositioning of the security hologram through a specific Moiré pattern generated during the verification process.      

Viscous potential flow analysis of Kelvin-Helmholtz instability with mass transfer and vaporization

Viscous potential flow analysis of Kelvin-Helmholtz instability with heat and mass transfer has been studied. A dispersion relation has been obtained. Stability criterion is given by a critical value of relative velocity. It has been found that heat and mass transfer has destabilizing effect on relative velocity when lower fluid viscosity is low while it has stabilizing effect when lower fluid viscosity is high. Various graphs have been plotted for relative velocity and growth rate. In statically unstable situation viscosity has stabilizing effect while in statically stable situation it has destabilizing effect.     

Direct visualization of Young’s boundary diffraction wave

Experimental investigations on Young’s boundary diffraction wave are presented where a wavefront division interferometric scheme is used on diffracted wavefront to generate two-beam interference fringes in the geometrically shadow region. These fringes have good visibility and are observable in the whole space, strongly advocating the physical existence of Young’s boundary diffraction wave as a separate entity. Analysis of these fringes may provide vital information about the structure and nature of boundary diffraction wave e.g. existence in whole space, dependence of amplitude on obliquity factor etc.