Solvent effect as the result of frontier molecular orbital interaction-1 : The diels-alder reaction between 1,4-naphthoquinone and 2,3-dimethylbutadiene

A kinetic investigation of the solvent effect in the Diels-Alder reaction of2,3-dimethylbutadiene and 1,4-naphthoquinone was undertaken and a hyperbolic correlation was obtained with the Acceptor Numbers (AN) of the solvent. Since ANs correlate with the LUMO of the solvent, the results can be rationalized in terms of an interaction between the LUMO of the solvent and the HOMO of the quinone which determines the MO energy of the solvated quinone. This rationalization seems useful when reactants, products and transition state are weakly polar.     

A multimembrane enzyme reactor operating in an electric field

Summary A multimembrane enzyme reactor, operating under an electric field, is described. This reactor is based on the concept of isoelectric traps, by which a pair of membranes, of appropriate pI value, are able to trap the enzyme, the buffering ions (which have to be amphoteric), the substrate and, if needed, cofactors. Charged reaction products can thus leave the enzyme chamber and be recovered in other chambers where they are trapped by the same isoelectric mechanism (if amphoteric). The unique advantages of such reactors are absence of enzyme inhibition by a feed-back mechanism and reaction yields approaching 100%. Examples of a urease and a trypsin/casein reactor are given. Presented at the 21^st ISC held in Stuttgart, Germany, 15^th–20^th September, 1996     

Decoding two-dimensional polyacrylamide gel electrophoresis complex maps by autocovariance function: a simplified approach useful for proteomics

This paper describes a mathematical approach applied for decoding the complex signal of two-dimensional polyacrylamide gel electrophoresis maps of protein mixtures. The method is helpful in extracting analytical information since separation of all the proteins present in the sample is still far from being achieved and co-migrating proteins are generally present in the same spot. The simplified method described is based on the study of the 2-D autocovariance function (2D-ACVF) computed on an experimental digitized map. The first part of the 2D-ACVF allows for the estimation of the number of proteins present in the sample (2D-ACVF computed at the origin) and of the separation performance (mean spot size). Moreover, the 2D-ACVF plot is a powerful tool in identifying order in the spot position, and singling it out from the complex separation pattern. This method was validated on synthetic maps obtained by computer simulation to describe 2-D PAGE real maps and reference maps retrieved from the SWISS-2DPAGE database. The results obtained are discussed by focusing on specific information relevant in proteomics: sample complexity, separation performance, and identification of spot trains related to post-translational modifications.     

Determination of heavy metals in environmental matrices sampled inside the Park of the Po Delta

Analytical results are reported for the determination of heavy metals in environmental matrices, sampled in an ecosystem inside a protected area: the Park of the Po Delta, located near the thermoelectric power station ENEL of Porto Tolle, one of the greater in Italy. The elements determined, in sediments and superficial water, are Ni and V, linked to the fuel oil combustion. However, in order to obtain a complete picture enough of heavy metals polluting load in the study areas, the following elements: Cd, Co, Cr, Cu, Fe, Mn, Pb and Zn are also determined. For all the elements, in addition to the detection limits, precision and accuracy are also given: the former, expressed as relative standard deviation (s(r)), and the latter, expressed as relative error (e), were good, being in all cases lower than 6%.     

Capillary electrophoresis of peptides and proteins in isoelectric buffers: an update

Capillary electrophoresis in acidic, isoelectric buffers is a novel methodology allowing fast protein and peptide analysis in uncoated capillaries. Due to the low pH adopted and to the use of dynamic coating with cellulose derivatives, silanol ionization is essentially suppressed and little interaction of macromolecules with the untreated wall occurs. In addition, due to the low conductivity of quasi-stationary, isoelectric buffers, high-voltage gradients can be applied (up to 800 V/cm) permitting fast peptide analysis with a high resolving power due to minimal diffusional peak spreading. Four such buffers are here described: cysteic acid (Cys-A, pI 1.85), iminodiacetic acid (IDA, pI 2.23), aspartic acid (Asp, pI 2.77) and glutamic acid (Glu, pI 3.22). A number of applications are reported, ranging from food analysis to the study of folding/unfolding transitions of proteins.     

Two-dimensional gel electrophoresis/matrix-assisted laser desorption/ionisation mass spectrometry of a milk powder

Proteins in a commercial milk powder have been separated by two-dimensional gel electrophoresis and analysed by matrix-assisted laser desorption ionisation mass spectrometry. The mass spectrometric analyses were conducted in two steps: analysis of the intact proteins following their passive extraction into a suitable solvent mixture and analysis in reflectron mode of in situ digests of a number of gel spots. The combination of the two methods allowed a reliable identification of a number of proteins, including nine caseins as well as certain protein modifications including single/multiple phosphorylation, lactose-protein conjugates and Coomassie Brilliant Blue adducts. Analyses of the intact proteins prior to their in situ digestion contributed to a more efficient and reliable consultation of protein databases.     

Heterodiene syntheses—XIX: Correlation of the kinetic data with lumo energies in the reaction between 1-aryl-4-benzylidene-5-pyrazolones and isopropyl vinyl ether

The kinetics of the reaction between 1-p-substituted phenyl-4-benzylidene-5-pyrazolones and isopropyl vinyl ether have been studied by quantitative spectroscopic analysis and liquid chromatography. The rate increases with the electron attracting character of the substituents and a correlation is obtained with σ- constants. The polarographic one-electron half-wave reduction potentials E^red_{$\text{1}\text{2}$}, which represent an experimental measure for the relative energy of the lowest unoccupied molecular orbital (LUMO), were measured. Good correlations were obtained between these and the kinetic data, thus demonstrating the frontier-controlled character of the cycloaddition and the dominant interaction between the LUMO of the pyrazolone and the highest occupied molecular orbital (HOMO) of the vinyl ether.     

Properties of poly-aminophenylboronate coatings in capillary electrophoresis for the selective separation of diastereoisomers and glycoproteins

The polymerisation of 3-aminophenylboronic acid (APBA) in aqueous environment has been used for the open tubular modification of capillary electrophoresis (CE) capillaries. Being poly-APBA endowed with boronic acid, aromatic rings and secondary amines groups, it posses a variety of functional groups affecting selectivity. Diastereoisomers (e.g. ascorbic and isoascorbic acid) and proteins (e.g. haemoglobins) were successfully separated onto poly-APBA column, by means of a combination of electrophoresis and open tubular electrochromatography. The mechanism of selection was investigated: results indicate an interplay between enhancing or silencing the contribution of the protonable functionalities (amino groups, boronic acid). The properties of APBA polymer coating make it attractive for CE separation and for further application in affinity separations and chip technologies.     

Computer simulation of affinity capillary electrophoresis

A computer-simulated model of affinity capillary electrophoresis is developed. Unlike existing models, it is able to describe the situation where the concentrations of sample molecules and ligand molecules are commensurable, or even the situation where the zones occupied by these molecules are not mixed initially. The model permits to study the dependence of the spatial and temporal distributions of sample molecules on various parameters such as reaction rate constants, concentrations of sample and reagent, electromigration velocities of sample and reagent and sample injection volume. A collection of peak shapes for different values of parameters is presented. The dependence of peak variance on the ratio of the time of analysis to the characteristic time of reaction is studied.