Photoactivatable V-Shaped Bifunctional Quinone Methide Precursors as a New Class of Selective G-quadruplex Alkylating Agents

Combining the selectivity of G-quadruplex (G4) ligands with the spatial and temporal control of photochemistry is an emerging strategy to elucidate the biological relevance of these structures. In this work, we developed six novel V-shaped G4 ligands that can, upon irradiation, form stable covalent adducts with G4 structures via the reactive intermediate, quinone methide (QM). We thoroughly investigated the photochemical properties of the ligands and their ability to generate QMs. Subsequently, we analyzed their specificity for various topologies of G4 and discovered a preferential binding towards the human telomeric sequence. Finally, we tested the ligand ability to act as photochemical alkylating agents, identifying the covalent adducts with G4 structures. This work introduces a novel molecular tool in the chemical biology toolkit for G4s.     

Affinity Chromatography-Based Assays for the Screening of Potential Ligands Selective for G-Quadruplex Structures

DNA G-quadruplexes (G4s) are key structures for the development of targeted anticancer therapies. In this context, ligands selectively interacting with G4s can represent valuable anticancer drugs. Aiming at speeding up the identification of G4-targeting synthetic or natural compounds, we developed an affinity chromatography-based assay, named G-quadruplex on Oligo Affinity Support (G4-OAS), by synthesizing G4-forming sequences on commercially available polystyrene OAS. Then, due to unspecific binding of several hydrophobic ligands on nude OAS, we moved to Controlled Pore Glass (CPG). We thus conceived an ad hoc functionalized, universal support on which both the on-support elongation and deprotection of the G4-forming oligonucleotides can be performed, along with the successive affinity chromatography-based assay, renamed as G-quadruplex on Controlled Pore Glass (G4-CPG) assay. Here we describe these assays and their applications to the screening of several libraries of chemically different putative G4 ligands. Finally, ongoing studies and outlook of our G4-CPG assay are reported.     

Chemometric Optimization of Biologically Active Compounds Extraction from Grape Marc: Composition and Antimicrobial Activity

The article focuses on the optimization of the extraction process of biologically active compounds (BAC) from grape marc—a by-product of the wine industry. The influence of temperature, specifically 30 °C, 45 °C and 65 °C, and ethanol concentration in solutions, specifically 0–96% (v/v) on the extraction yield of polyphenols, flavonoids, tannins and anthocyanins, were investigated. The composition of individual polyphenols, anthocyanins and organic acids, antioxidant activity (DPPH and ABTS) and CIELab chromatic characteristics of the grape marc extracts (GME), were characterized. The microbiostatic and microbicidal effects in direct contact of GME with pathogenic microorganisms, Bacillus subtilis, Staphylococcus aureus, Escherichia coli, Klebsiella pneumoniae, were determined in vitro. The influence of extraction parameters on the total polyphenol content (TPC), total flavonoid content (TFC), tannin content (TC), total anthocyanin content (TAC) and their interdependencies were studied using information analysis. A mathematical model was developed on cubic spline functions. The analysis of individual compounds showed the presence of a wide range of flavonoids (procyanidin B2, procyanidin B1, hyperoside and quercetin), flavones (catechin), hydroxybenzoic acid derivatives (gallic, protocatechuic, p-hydroxybenzoic acids, m-hydroxybenzoic acid, syringic acid), hydroxycinic acid derivatives and ferulic acid methyl ester. The malvidol-3-glucoside was the main anthocyanin identified in the extract. A high amount of tartaric acid was also found. GME showed significant antimicrobial activity against Gram-positive bacteria and lower activity against Gram-negative bacteria.     

Novel nanocomposite membranes from cellulose acetate and clay‐silica nanowires

In this study, a new class of heterogeneous membranes based on cellulose acetate (CA) polymer and a complex filler clay‐silica nanowires (SiO₂NWs) was investigated for potential biomedical applications. SiO₂NWs were synthesized using natural clay through a facile sol–gel method and were dispersed in the polymer solution by sonication in the 1.25, 2.5, and 5% weight ratio to the CA acetate polymer. Membranes were subsequently prepared via phase inversion by precipitation of the CA polymer in water. The pristine CA membrane and SiO₂NWs based nanocomposites membranes were characterized using different characterization techniques. The presence of the SiO₂NWs in the CA membrane was found to significantly enhance the protein retention, water wettability and thermal as well as mechanical properties in comparison to the pristine CA membrane. Water flows studies at different temperatures and the retention of bovine serum albumin have been studied and the nanocomposite membranes were found to exhibit superior performances compared with the pristine CA membranes. SiO₂NWs‐CA membranes showed a much higher stability to the water temperature change during separation than CA membranes. Morphological changes clearly revealed that the composite membrane were much more compact than the pristine CA membranes. The rabbit dermal fibroblasts cell viability in cultures after 72 hr of incubation was found to be greater than 80%. These newly synthesized composite membranes exhibit a high potential to be used for various medical applications because of their non‐cytotoxic characteristics. Copyright © 2016 John Wiley & Sons, Ltd.     

Axial and equatorial carbene ligands of dimanganese and dirhenium monocarbene complexes: Synthesis, characterisation and structural studies

The binuclear alkoxycarbene complexes [M₂(CO)₉{C(OEt)C₄H₃Y}] (M = Mn, Y = S(1), O(2); Re, Y = S(3), O(4)) were synthesised and characterised, giving axial carbene ligands for the dimanganese complexes, and equatorial carbene ligands for the dirhenium complexes. Aminolysis of these complexes with ammonia and n-propylamine yielded complexes [M₂(CO)₉{C(NHR)C₄H₃Y}] (R = H, M = Mn, Y = S(5), O(6); Re, Y = S(7), O(8); R = propyl, M = Mn, Y = S(9), O(10); Re, Y = S(11), O(12)). For the smaller NH₂-substituted carbene ligands, the X-ray structures determined showed equatorial carbene ligands for both dimanganese and dirhenium complexes, while the NHPr-substituted carbene complexes retained the original configurations of the precursor alkoxy carbene complex, indicating that the steric effects of both the M(CO)₅-fragment and the carbene ligand substituent can affect the coordination site of the carbene ligands of Group VII transition metal complexes in the solid state.     

The intriguing case of organic impurities contained in synthetic methanol: a mass spectrometry based investigation

The role of organic impurities in the methanol-to-olefin (MTO) industrial process catalyzed by zeolites is the subject of ongoing debate. We have found that methanol (HPLC and RPE grade) purchased from different chemical companies may contain organic impurities, whose ionization is the dominant process in the positive ion atmospheric pressure chemical ionization (APCI) spectrum of commercial CH(3)OH. Such impurities produce ions with elemental formulae C(n)H(2n+1)O(+) (n = 4, 5, 6); likewise, ionization of tetradeuterated methanol (CD(3)OD) leads to the corresponding fully deuterated series C(n)D(2n+1)O(+) (n = 4, 5, 6), an outcome which represents a clear evidence of their widespread diffusion. We suggest that their formation might be inherent to the chemical process whereby methanol is synthesized on an industrial scale. Mass spectrometry (MS) experiments, gas chromatography/mass spectrometry (GC/MS) analysis and nuclear magnetic resonance (NMR) measurements allowed us to establish that commercial methanol contains dimethyl acetals of simple alkyl ketones, such as propanone, butanone and pentanone. Ab initio calculations (DFT/B3LYP) proved useful to understanding the ionization mechanisms of such impurities.     

Polystyrene/thermoplastic starch blends with different plasticizers

Conventional plastics has a large impact in increasing the environment’s pollution. That’s why the interest has turned towards novel partially and completely biodegradable polymers. In this work, blends of polystyrene and thermoplastic starch with glycerol and Buriti (Mauritia flexuosa L.) oil as plasticizers were prepared. Samples were analyzed using TG/DTG and DSC techniques. The TG results indicated that the blends with Buriti oil are thermally more stable than those with glycerol. The DSC analysis that Buriti oil provides a higher degree of plasticization of PS, compared to the blends plasticized using glycerol under the studied conditions.