Iodoolefinic polypropionate building blocks from vinyl silanes with control of geometry by solvent and by neighboring group participation

Iododesilylation of trisubstituted (Z)-silyl olefins proceeds with retention of geometry in hexafluoroisopropanol (HFIP) but, for unhindered cases, with inversion of geometry in DMSO. When an acyloxy substituent is positioned to participate in the reaction, the protocol consistently leads to inversion of geometry.     

ReverseScreen3D: a structure-based ligand matching method to identify protein targets

Ligand promiscuity, which is now recognized as an extremely common phenomenon, is a major underlying cause of drug toxicity. We have developed a new reverse virtual screening (VS) method called ReverseScreen3D, which can be used to predict the potential protein targets of a query compound of interest. The method uses a 2D fingerprint-based method to select a ligand template from each unique binding site of each protein within a target database. The target database contains only the structurally determined bioactive conformations of known ligands. The 2D comparison is followed by a 3D structural comparison to the selected query ligand using a geometric matching method, in order to prioritize each target binding site in the database. We have evaluated the performance of the ReverseScreen2D and 3D methods using a diverse set of small molecule protein inhibitors known to have multiple targets, and have shown that they are able to provide a highly significant enrichment of true targets in the database. Furthermore, we have shown that the 3D structural comparison improves early enrichment when compared with the 2D method alone, and that the 3D method performs well even in the absence of 2D similarity to the template ligands. By carrying out further experimental screening on the prioritized list of targets, it may be possible to determine the potential targets of a new compound or determine the off-targets of an existing drug. The ReverseScreen3D method has been incorporated into a Web server, which is freely available at http://www.modelling.leeds.ac.uk/ReverseScreen3D .     

Spectral Diffusion of Single Molecules in a Hierarchical Energy Landscape

Spectral diffusion as a result of both the transitions between different molecular conformers and the ′′molecular softness′′ of quasi‐free perylene diimides on a SiO₂ surface is investigated by means of single‐molecule spectroscopy, which reveals the time dependence of both the fluorescence spectra and the three‐dimensional orientation. Spectral wavelengths of all single emitters cover a wide energy range of about 0.27 eV, which is due to different types of conformers with large differences in optical transition energy. Time‐dependent spectral trajectories of single emitters within this wavelength manifold are evaluated with a model transcribed from the analysis of spatial diffusion. Spectral diffusion processes are closely correlated with fluorescence emission and excitation power. The overall analysis of spectral diffusion reveals, similar to proteins, a hierarchy of energy barriers in a broad energy landscape.     

One-pot enyne ring-closing metathesis–Diels–Alder reactions for the synthesis of polycyclic sulfamides

Ring-closing metathesis (RCM) and sequential Yb(OTf)₃ promoted Diels–Alder reactions of sulfamide-linked enynes proceeded selectively in one-pot to afford a series of bicyclic and tricyclic sulfamides. Excellent levels of diastereoselectivity are observed for the cycloaddition step, with only the endo-adducts being isolated. The protocol was further extended to incorporate a one-pot RCM–cross metathesis (CM)–Diels–Alder sequence, permitting rapid access to high levels of molecular complexity from simple and easily accessible precursors.     

Identification tree based on fragmentation rules for structure elucidation of organophosphorus esters by electrospray mass spectrometry

Organophosphorus compounds have played important roles as pesticides, chemical warfare agents and extractors of radioactive material. Structural elucidation of phosphonates poses a particular challenge because their initial forms can be hydrolyzed, thus, degradation products may predominate in samples acquired in the field. The analysis of non‐volatile organophosphorus compounds and their degradation products is possible using electrospray tandem mass spectrometry ESI‐MS/MS. Here, we present a generic strategy that allows the unambiguous identification of substituents for two families of organophosphorus compounds: the phosphonates and phosphates. General fragmentation rules were deduced based on the study of decomposition pathways of 55 organophosphorus esters, including examples found in the literature. Multistage MS (MSⁿ) experiments at high resolution in a hybrid mass spectrometer provide accurate mass measurements, whereas collision‐induced dissociation experiments in a triple quadrupole give access to small fragment ions. The creation of a specific nomenclature for each possible structure of organophosphorus compound, depending on the alkyl side chain linked to the oxygen, was achieved by applying these fragmentation rules. This led to the creation of an ‘identification tree’ based upon the unique consecutive decomposition pathways uncovered for each individual compound. Hence, seven structural motifs were created that orient an unequivocal identification using the ‘identification tree’. Despite the similar structures of the ensemble of phosphate and phosphonate esters, distinct identifications based upon characteristic neutral losses and diagnostic fragment ions were possible in all cases. Copyright © 2013 John Wiley & Sons, Ltd.     

Thermal decomposition of poly(butylene terephthalate)

Detailed results of the overall thermal degradation of poly(butylene terephthalate) are reported. Laser microprobe analysis and dynamic mass spectrometric techniques were used to identify the primary volatile degradation products and initial pyrolysis reactions that control polymer degradation. A complex multistage decomposition mechanism was observed which involves two major reaction pathways. Initial degradation occurs by an ionic decomposition process that results in the evolution of tetrahydrofuran. This is followed by concerted ester pyrolysis reactions that involve an intermediate cyclic transition state and yield 1,3-butadiene. Simultaneous decarboxylation reactions occur in both decomposition regimes. Finally, the latter stages of polymer decomposition were characterized by evolution of CO and complex aromatic species such as toluene, benzoic acid, and terephthalic acid. Activation energies of formation for the main pyrolysis products were determined from the dynamic measurements of the major ion species and indicate values of E = 27.9 kcal/mole for the production of tetrahydrofuran and E = 49.7 kcal/mole for the production of butadiene.     

Group ib organometallic chemistry : XXXIV. Thermal behaviour and chemical reactivity of tetranuclear Me2N-substituted diarypropenylcopper-copper anion (Vi2Cu4X2) and mixed diarylpropenyl/organocopper (Vi2Cu4R2) compounds

Thermal decomposition of configurationally pure 1,2-diarylpropenylcopper compounds Z-Vi₂CU₄Br₂ and Z-Vi₂Cu₄R₂ [Vi  (2-Me₂NC₆H₄)CC(Me)-(C₆H₄Me-4), R  2-Me₂NC₆H₄ or 4-MeC₆H₄CC] predominantly results in the formation of ViH. In contrast, only dimers (ViVi) were formed on thermolysis of (Z-ViCu₂OTf)_η which is a further illustration of the influence of the counter anion on the reactivity of organocopper cluster compounds. However, in both cases partial inversion of configuration, giving mixtures of isomers, was observed. The thermolysis of (Z-ViCu₂OTf)_η is discussed in terms of OTf-enhanced intraaggregate electron-transfer processes. The formation of incipient vinyl cations which are η²-coordinated to the copper cluster can explain the observed isomerization.Also in the hydrolysis reaction of Z-Vi₂Cu₄Br₂ mixtures of isomeric ViH compounds were obtained, the E/Z ratio being dependent on the type of reagent used. Mixtures of isomeric ViX compounds (X  Br, Cl, I) were formed in the reaction of Z-Vi₂Cu₄Br₂ with I₂ and CuCl₂. An explanation for the occurrence of isomerization is presented.Dimers (ViVi) were almost absent in the product mixture resulting from the reaction of Z-Vi₂Cu₄Br₂ with CuCl₂. In contrast, ViVi is obtained in about 50% yield from the reaction of ViLi with CuCl₂ which is in accord with earlier observations for the reaction of aryllithium compounds with cupric halides.Highly selective E-ViBr formation was observed in the reaction of E-ViLi with AgBr. This reaction probably proceeds via a thermally unstable Z-ViAg₂Br intermediate.     

Dissociation quotients of succinic acid in aqueous sodium chloride media to 225°C

The first and second molal dissociation quotients of succinic acid were measured potentiometrically with a hydrogen-electrode, concentration cell. These measurements were carried out from 0 to 225°C over 25° intervals at five ionic strengths ranging from 0.1 to 5.0 molal (NaCl). The dissociation quotients from this and two other studies were combined and treated with empirical equations to yield the following thermodynamic quantities for the first acid dissociation equilibrium at 25°C: log K_1a=–4.210±0.003; H _1a ⁰ =2.9±0.2 kJ-mol^–1; S _1a ⁰ =–71±1 J-mol^–1-K^–1; and C _p1a ⁰ =–98±3 J-mol^–1-K^–1; and for the second acid dissociation equilibrium at 25°C: log K_2a=–5.638±0.001; H _2a ⁰ = –0.5±0.1 kJ-mol^–1; S _2a ⁰ =–109.7±0.4 J-mol^–1-K^–1; and C _p2a ⁰ = –215±8 J-mol^–1-K^–1.