Theoretical depolymerization kinetics. IV. Effect of a volatile fraction on the degradation of an initial “most probable” polymer

The effect of volatilization of molecules larger than monomer has been introduced into the solution of the Simha, Wall, and Blatz kinetic equations for the degradation of a high polymer with an initial “most probable” distribution. Equations describing the rate of sample weight and average molecular weight change result. They differ from the previous “most probable” equations primarily in the presence of an additive term representing the random splitting near the chain ends due to bond scission or transfer attack. Equations are also obtained for the rate of formation of each volatile species and hence the product distribution. The effect of volatilization of larger fragments is discussed in detail for the special case of random scission initiation. The product distribution is discussed for two special cases.     

The electrostatic field of B-DNA

The electrostatic field associated with one complete turn of B-DNA is presented. Two base sequences poly (dG) · poly (dC) and poly (dA) · poly (dT) are studied and the effects of sodium counterions bound to the nucleic acid are investigated. The contrasts between the electrostatic potential and the electrostatic field of the macromolecules are discussed and the possible applications of the field are considered.     

Ring size effects. III. Carbonium ion stability as a factor in the course of the pinacol rearrangement

The formation of the initial carbonium ion in the pinacol rearrangement will be the major factor in determining product composition when the reaction is carried out at 0°C with concentrated sulfuric acid.     

Consequences of sample size, variable selection, and model validation and optimisation, for predicting classification ability from analytical data

This article discusses problems of validating classification models especially in datasets where sample sizes are small and the number of variables is large. It describes the use of percentage correctly classified (%CC) as an indicator for success of a classification model. For small datasets, %CC should not be used uncritically and its interpretation depends on sample size. It illustrates the use of a common classification method, discriminant partial least squares (D-PLS) on a randomly generated dataset of 200 samples and 200 variables.

An aim of the classifier is to determine whether the null hypothesis (there is no distinction between two classes) can be rejected. Autoprediction gives an 84.5% CC. It is shown that, if there is variable selection, it must be performed independently on the training set to obtain a CC close to 50% on the test set; otherwise, over-optimistic and false conclusions can be reached about the ability to classify samples into groups.

Finally, two aims of determining the quality of a model are frequently confused, namely optimisation (often used to determine the most appropriate number of components in a model) and independent validation; to overcome this, the data should be split into three groups.

There are often difficulties with model building if validation and optimisation have been done on different groups of samples, especially using iterative methods, each group being modelled using properties, such as a different number of components or different variables.     

Structure-based optimization of a non-beta-lactam lead results in inhibitors that do not up-regulate beta-lactamase expression in cell culture

Bacterial expression of beta-lactamases is the most widespread resistance mechanism to beta-lactam antibiotics, such as penicillins and cephalosporins. There is a pressing need for novel, non-beta-lactam inhibitors of these enzymes. One previously discovered novel inhibitor of the beta-lactamase AmpC, compound 1, has several favorable properties: it is chemically dissimilar to beta-lactams and is a noncovalent, competitive inhibitor of the enzyme. However, at 26 microM its activity is modest. Using the X-ray structure of the AmpC/1 complex as a template, 14 analogues were designed and synthesized. The most active of these, compound 10, had a K(i) of 1 microM, 26-fold better than the lead. To understand the origins of this improved activity, the structures of AmpC in complex with compound 10 and an analogue, compound 11, were determined by X-ray crystallography to 1.97 and 1.96 A, respectively. Compound 10 was active in cell culture, reversing resistance to the third generation cephalosporin ceftazidime in bacterial pathogens expressing AmpC. In contrast to beta-lactam-based inhibitors clavulanate and cefoxitin, compound 10 did not up-regulate beta-lactamase expression in cell culture but simply inhibited the enzyme expressed by the resistant bacteria. Its escape from this resistance mechanism derives from its dissimilarity to beta-lactam antibiotics.     

Channel flow cell studies on the evaluation of surface pretreatments using phosphoric acid or polymaleic acid for calcite stone protection

The dissolution kinetics of surface-pretreated and weathered calcite was investigated in dilute acid using a channel flow cell with microdisk detection. Two pretreatments were studied, polymaleic acid and phosphoric acid. Treatment with polymaleic acid was shown to significantly passivate calcite but to a lesser extent than the phosphoric acid and the former coating was found to be less effective for protection of calcite from acid attack. However, treatment of calcite with phosphoric acid resulted in the passivation of calcite from acid attack which strongly inhibited dissolution, an effect that was enhanced even further after exposure to the environment.     

Synthesis of fused polycyclic aromatics by palladium-catalyzed annulation of arynes using 2-halobiaryls

The Pd-catalyzed annulation of arynes by 2-halobiaryls and related vinylic halides provides a very efficient, high yielding synthesis of polycyclic aromatic and heteroaromatic hydrocarbons. This process appears to involve the catalytic, stepwise coupling of two very reactive substrates, an aryne and an organopalladium species, to generate excellent yields of cross-coupled products.     

Radiometric and fluorimetric determination of aminosilanes and protein covalently bound to thermally pretreated glass substrates

Derivatization of solid soda-lime glass spheres with aminosilanes and the stability of these groups near physiological pH in flow streams of aqueous buffered solutions are described. The presence of immobilized and adsorbed amines in the nanomolar range is confirmed by using two independent methods, one based on a radiotracer and the other on the fluorescent marker, fluorescamine. A method for covalently attaching bovine serum albumin to the beads is described.     

Mitt. XV: Struktur und reaktivität von isoanellierten heterocyclischen systemen mit 4nπ- und (4n + 2) π-elektronen. 2-t-butyl-4-methyl-2,4-dihydropyrrolo[3,4-b]indole. reaktionen mit aktivierten CC-dienophilen

Reactions of 2-t-butyl-4-methyl-2,4-dihydropyrrolo[3,4-b]indoles with N-aryl-maleimides have been investigated. The formation of 1:1-cycloadducts is influenced by substituents at 1,3-position. The consecutive transformations of these intermediates can be controlled by nucleophilic solvents or reagents. Ring opening reactions occur at the labile N,O-acetal group of the cycloadducts followed by eliminaton or addition reactions.     

Design and synthesis of aromatic inhibitors of anthranilate synthase

Aromatic analogues of chorismate were synthesised as potential inhibitors of anthranilate synthase. Molecular modelling using GOLD2.1 showed that these analogues docked into the active site of Serratia marcescens anthranilate synthase in the same conformation as chorismate. Most compounds were found to be micromolar inhibitors of S. marcescens anthranilate synthase. The most potent analogue, 3-(1-carboxy-ethoxy)-4-hydroxybenzoate (K(I) 3 microM), included a lactyl ether side chain. This appears to be a good replacement for the enol-pyruvyl side chain of chorismate.