"Proton holes" in long-range proton transfer reactions in solution and enzymes: A theoretical analysis

Proton transfers are fundamental to chemical processes in solution and biological systems. Often, the well-known Grotthuss mechanism is assumed where a series of sequential "proton hops" initiates from the donor and combines to produce the net transfer of a positive charge over a long distance. Although direct experimental evidence for the sequential proton hopping has been obtained recently, alternative mechanisms may be possible in complex molecular systems. To understand these events, all accessible protonation states of the mediating groups should be considered. This is exemplified by transfers through water where the individual water molecules can exist in three protonation states (water, hydronium, and hydroxide); as a result, an alternative to the Grotthuss mechanism for a proton transfer through water is to generate a hydroxide by first protonating the acceptor and then transfer the hydroxide toward the donor through water. The latter mechanism can be most generally described as the transfer of a "proton hole" from the acceptor to the donor where the "hole" characterizes the deprotonated state of any mediating molecule. This pathway is distinct and is rarely considered in the discussion of proton-transfer processes. Using a calibrated quantum mechanical/molecular mechanical (QM/MM) model and an effective sampling technique, we study proton transfers in two solution systems and in Carbonic Anhydrase II. Although the relative weight of the "proton hole" and Grotthuss mechanisms in a specific system is difficult to determine precisely using any computational approach, the current study establishes an energetics motivated framework that hinges on the donor/acceptor pKa values and electrostatics due to the environment to argue that the "proton hole" transfer is likely as important as the classical Grotthuss mechanism for proton transport in many complex molecular systems.     

Redox transformations in desorption electrospray ionization

Redox changes occur in some circumstances when organic compounds are analyzed by desorption electrospray ionization mass spectrometry (DESI-MS). However, these processes are limited in scope and the data presented here suggest that there are only limited analogies between the redox behavior in DESI and the well-known solution-phase electrochemical processes in standard electrospray ionization (ESI). Positive and negative ion modes were both investigated and there is a striking asymmetry between the incidence of oxidation and of reduction. Although in negative ion mode DESI experiments, some aromatic compounds were ionized as odd-electron anion radicals, examples of full reduction were not found. By contrast, oxidation in the form of oxygen atom addition (or multiple oxygen atom additions) was observed for several different analytes. These oxidation reactions point to chemically rather than electrochemically controlled processes. Data is presented which suggests that oxidation is predominantly caused by reaction with discharge-created gas-phase radicals. The fact that common reducing agents and known antioxidants such as ascorbic acid are not modified, while a saturated organic acid like stearic acid is oxidized in DESI, indicates that the usual electrochemical redox reactions are not significant but that redox chemistry can be induced under special experimental conditions.     

Forensic applications of ambient ionization mass spectrometry

This review highlights and critically assesses forensic applications in the developing field of ambient ionization mass spectrometry. Ambient ionization methods permit the ionization of samples outside the mass spectrometer in the ordinary atmosphere, with minimal sample preparation. Several ambient ionization methods have been created since 2004 and they utilize different mechanisms to create ions for mass-spectrometric analysis. Forensic applications of these techniques—to the analysis of toxic industrial compounds, chemical warfare agents, illicit drugs and formulations, explosives, foodstuff, inks, fingerprints, and skin—are reviewed. The minimal sample pretreatment needed is illustrated with examples of analysis from complex matrices (e.g., food) on various substrates (e.g., paper). The low limits of detection achieved by most of the ambient ionization methods for compounds of forensic interest readily offer qualitative confirmation of chemical identity; in some cases quantitative data are also available. The forensic applications of ambient ionization methods are a growing research field and there are still many types of applications which remain to be explored, particularly those involving on-site analysis. Aspects of ambient ionization currently undergoing rapid development include molecular imaging and increased detection specificity through simultaneous chemical reaction and ionization by addition of appropriate chemical reagents.     

Plasma-induced graft-polymerization of polyethylene glycol acrylate on polypropylene substrates

A detailed study of argon plasma-induced graft-polymerization of polyethylene glycol acrylate (PEGA) on polypropylene (PP) substrates (membranes and films) is presented. The process consists of four steps: (a) plasma pre-activation of the PP substrates; (b) immersion in a PEGA solution; (c) argon plasma-induced graft-polymerization; (d) washing and drying of the samples. Influence of the solution and plasma parameters on the process efficiency evaluated in terms of amount of grafted polymer, coverage uniformity and substrates wettability, are investigated. The plasma-induced graft-polymerization of PEGA is then followed by sample weighting, water droplet adsorption time and contact angle measurements, attenuated total reflection infrared spectroscopy (ATR-IR), X-ray photoelectron spectroscopy (XPS) and atomic force microscopy (AFM) analyses. The stability of the obtained thin films was evaluated in water and in phosphate buffer saline (PBS) at 37 °C. Results clearly indicates that plasma-induced graft-polymerization of PEGA is a practical methodology for anti-fouling surface modification of materials.     

Radial convection of plasma structures in a turbulent rotating magnetized-plasma column

The turbulent regime of a rotating magnetized plasma column has been studied. The detection and the spatiotemporal analysis of structures by means of conditional sampling techniques is performed. Because of the overall rotation and centrifugal effects, the structures inside the turbulence move on average along a spiral trajectory leading to a net radial convection of the charged particles to the walls. The development of a poloidal electric field inside the structures has been measured. It leads to the observed outwards radial E x B drift in agreement with the expectations of recent theoretical works.     

Ar doping of CH<Subscript>4</Subscript> plasmas for carbon film deposition

In the classical box-counting method a partition sum is used for calculation of multifractal spectra. It is shown that differently normalized partition sums yield multifractal spectra that are not equivalent. Therefore, their direct comparison is not possible unless convenient transformations are found. This fact is illustrated with conventional and unconventional multifractal spectra of the dyadic Cantor cluster. So far the crucial influence of normalization procedure on multifractal spectra of the box-counting method has not been recognized. To remove this deficiency a generalized partition sum has been proposed. Common partition sums of the box-counting method are included in the generalized one as special normalization events. The multifractal spectra of the generalized partition sum are classified according to the normalization parameters. Transformation relations enabling mutual transitions and correct comparison among the generalized spectra of different normalization are also presented.     

Photoproduction of straight phi(1020) mesons on the proton at large momentum transfer

The cross section for straight phi meson photoproduction on the proton has been measured for the first time up to a four-momentum transfer -t = 4 GeV2, using the CLAS detector at the Thomas Jefferson National Accelerator Facility. At low four-momentum transfer, the differential cross section is well described by Pomeron exchange. At large four-momentum transfer, above -t = 1.8 GeV2, the data support a model where the Pomeron is resolved into its simplest component, two gluons, which may couple to any quark in the proton and in the straight phi.     

An analysis of the factors affecting the peak shape and the quantitative reliability of a heat flux DSC cell

In a previous work it was shown that unexpected problems may arise in the calibration of a heat flux DSC cell. To understand the origin of these problems an analysis has been undertaken of what happens in the cell before, during and after the peak. Here the first part of this analysis is reported dealing with the baseline and with the dependence of the recorded signal on time. Analytical expressions are obtained connecting the measured signal with experimental variables and instrument constants. Completely independent on sample related properties, a maximum measurable ΔT is introduced as limiting factor for quantitative reliability.     

Determination of Pesticides in the Respirable Fraction of Airborne Particulate Matter by High-performance Liquid Chromatography–Tandem Mass Spectrometry

Potential harmful effects of pesticides include risks to human health of workers involved in the wet spray application in cultivated areas. Inhalation exposure depends on several factors including pesticide concentrations in the respirable fraction of airborne particulate matter (PM₄). To ensure a high level of protection, the use of tractors with cabins provides protection against dust, aerosols, and vapors. Since tractors not providing maximum protection are still in use, PM₄ was sampled during spreading operations in agricultural fields inside and outside tractor cabins. Sample preparation technique based on accelerated solvent extraction and solid-phase extraction cleanup was optimized before analysis of nine pesticides in PM₄. Meptyldinocap, deltamethrin, myclobutanil, fluopyram, methoxyfenozide, dimethomorph, fluopicolide, cyflufenamid, and metrafenone were simultaneously determined by high-performance liquid chromatography–electrospray ionization–tandem mass spectrometry (HPLC–ESI–MS–MS). The results demonstrated the efficacy of the tractor cabs used in the sampling sites.