Unusual NHC–Iridium(I) Complexes and Their Use in the Intramolecular Hydroamination of Unactivated Aminoalkenes

N‐heterocyclic carbene (NHC) ligands with naphthyl side chains were employed for the synthesis of unsaturated, yet isolable [(NHC)Ir(cod)]⁺ (cod=1,5‐cyclooctadiene) complexes. These compounds are stabilised by an interaction of the aromatic wingtip that leads to a sideways tilt of the NHC?Ir bond. Detailed studies show how the tilting of such N‐heterocyclic carbenes affects the electronic shielding properties of the carbene carbon atom and how this is reflected by significant upfield shifts in the ¹³C NMR signals. When employed in the intramolecular hydroamination, these [(NHC)Ir(cod)]⁺ species show very high catalytic activity under mild reaction conditions. An enantiopure version of the catalyst system produces pyrrolidines with excellent enantioselectivities.     

Von Neumann and Newman poker with a flip of hand values

The von Neumann and Newman poker models are simplified two-person poker models in which hands are modeled by real values drawn uniformly at random from the unit interval. We analyze a simple extension of both models that introduces an element of uncertainty about the final strength of each player’s own hand, as is present in real poker games. Whenever a showdown occurs, an unfair coin with fixed bias q is tossed, 0≤q≤1/2. With probability 1−q, the higher hand value wins as usual, but, with the remaining probability q, the lower hand wins. Both models favor the first player for q=0 and are fair for q=1/2. Our somewhat surprising result is that the first player’s expected payoff increases with q as long as q is not too large. That is, the first player can exploit the additional uncertainty introduced by the coin toss and extract even more value from his opponent.     

Coloring random graphs online without creating monochromatic subgraphs

Consider the following random process: The vertices of a binomial random graph G_n,p are revealed one by one, and at each step only the edges induced by the already revealed vertices are visible. Our goal is to assign to each vertex one from a fixed number r of available colors immediately and irrevocably without creating a monochromatic copy of some fixed graph F in the process. Our first main result is that for any F and r, the threshold function for this problem is given by p₀(F,r,n) = n^‐1/m*₁(F,r), where m*₁(F,r) denotes the so‐called online vertex‐Ramsey density of F and r. This parameter is defined via a purely deterministic two‐player game, in which the random process is replaced by an adversary that is subject to certain restrictions inherited from the random setting. Our second main result states that for any F and r, the online vertex‐Ramsey density m*₁(F,r) is a computable rational number. Our lower bound proof is algorithmic, i.e., we obtain polynomial‐time online algorithms that succeed in coloring G_n,p as desired with probability 1 ‐ o(1) for any p(n) = o(n^‐1/m*₁(F,r)). © 2012 Wiley Periodicals, Inc. Random Struct. Alg. 44, 419–464, 2014     

Microscale NMR screening of new detergents for membrane protein structural biology

The rate limiting step in biophysical characterization of membrane proteins is often the availability of suitable amounts of protein material. It was therefore of interest to demonstrate that microcoil nuclear magnetic resonance (NMR) technology can be used to screen microscale quantities of membrane proteins for proper folding in samples destined for structural studies. Micoscale NMR was then used to screen a series of newly designed zwitterionic phosphocholine detergents for their ability to reconstitute membrane proteins, using the previously well characterized beta-barrel E. coli outer membrane protein OmpX as a test case. Fold screening was thus achieved with microgram amounts of uniformly (2)H, (15)N-labeld OmpX and affordable amounts of the detergents, and prescreening with SDS-gel electrophoresis ensured efficient selection of the targets for NMR studies. A systematic approach to optimize the phosphocholine motif for membrane protein refolding led to the identification of two new detergents, 138-Fos and 179-Fos, that yield 2D [ (15)N, (1)H]-TROSY correlation NMR spectra of natively folded reconstituted OmpX.     

Synthesis of compounds presenting three and four anthracene units as potential connectors to mediate infinite lateral growth at the air/water interface

We report the synthesis of molecular sheets based on the photochemically initiated dimerization of monomers with lateral anthracene units. The film thickness and composition were investigated by ellipsometry and X-ray photoelectron spectroscopy (XPS). The mechanical stability of the film was sufficient to span it over 45x45 microm-sized holes. Several model reactions were performed to illustrate the underlying chemistry and to assist in analysis. The reported experiments are considered first steps towards the ultimate goal of the rational synthesis of laterally "infinite", one-monomer-unit-thick molecular sheets with a long-range positional order and a periodic covalent-bonding pattern. Such sheets are referred to as 2D polymers and are considered a prime goal of chemical synthesis with intriguing applications.     

Probing the formation of stable tertiary structure in a model miniprotein at atomic resolution: determinants of stability of a helical hairpin

The minimal model system to study the basic principles of protein folding is the hairpin. The formation of beta-hairpins, which are the basic components of antiparallel beta-sheets, has been studied extensively in the past decade, but much less is known about helical hairpins. Here, we probe hairpin formation between a polyproline type-II helix and an alpha-helix as present in the natural miniprotein peptide YY (PYY). Both turn sequence and interactions of aromatic side chains from the C-terminal alpha-helix with the pockets formed by N-terminal Pro residues are shown by site-directed mutagenesis and solution NMR spectroscopy in different solvent systems to be important determinants of backbone dynamics and hairpin stability, suggesting a close analogy with some beta-hairpin structures. It is shown that multiple relatively weak contacts between the helices are necessary for the formation of the helical hairpin studied here, whereas the type-I beta-turn acts like a hinge, which through certain single amino acid substitutions is destabilized such that hairpin formation is completely abolished. Denaturation and renaturation of tertiary structure by temperature or cosolvents were probed by measuring changes of chemical shifts. Folding of PYY is both reversible and cooperative as inferred from the sigmoidal denaturation curves displayed by residues at the interface of the helical hairpin. Such miniproteins thus feature an important hallmark of globular proteins and should provide a convenient system to study basic aspects of helical hairpin folding that are complementary to those derived from studies of beta-hairpins.     

The venom of the snake genus Atheris contains a new class of peptides with clusters of histidine and glycine residues

We investigated venoms from members of the genus Atheris (Serpentes, Viperidae), namely the rough scale bush viper (Atheris squamigera), the green bush viper (A. chlorechis) and the great lakes bush viper (A. nitschei), using mass spectrometry-based strategies, relying on matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOF-MS) and electrospray ionisation tandem mass spectrometry (ESI-MS/MS) with de novo peptide sequencing. We discovered a set of novel peptides with masses in the 2-3 kDa range and containing poly-His and poly-Gly segments (pHpG). Complete primary structural elucidation and confirmation of two sequences by Edman degradation indicated the consensus sequence EDDH(9)GVG(10). Bioinformatic investigations in protein sequence databanks did not show relevant homology with known peptides or proteins. However, a more extensive investigation of data in nucleic acid databases revealed some similarities to the precursor sequences of bradykinin potentiating peptides (BPP) and C-type natriuretic peptides (CNP), agents that are known to affect the cardiovascular system by acting on specific metalloproteases and receptors. The novel pHpG peptides found in Atheris venoms might also act on the cardiovascular system by inhibiting particular metalloproteases, which however remain to be identified.