Microfluidic selection and applications of aptamers

The high affinity and specificity of aptamers make them ideal reagents for a wide range of analytical applications. It is not surprising that they are finding application in microfluidics as well. CE has proven to be an efficient technique for isolating aptamers. Aptamers have been used as affinity reagents in CE assays. Aptamer-based chromatography stationary phases have demonstrated unique selectivities. Possibly the application that holds the highest potential is aptamer microarrays for screening proteomic samples.     

Diffusiophoresis in suspensions of highly charged soft particles

Diffusiophoresis phenomenon of aoft particles suspended in binary electrolyte solutions is explored theoretically in this study based on the spherical cell model, focusing on the chemiphoresis component in absence of diffusion potential. Both the electrostatic and hydrodynamic aspects of the boundary confinement, or steric effect, due to the presence of neighboring particles are examined extensively under various electrokinetic conditions. Significant local extrema are found in mobility profiles expressed as functions of the Debye length in general, synchronized with the strength of the motion-inducing double layer polarization. Moreover, a seemingly peculiar phenomenon is observed that the soft particles may move faster in more concentrated suspensions. The competition between the simultaneous enhancement of the motion-inducing electric driving force and the motion-retarding hydrodynamic drag force from the boundary confinement effect of the neighboring particles is found to be responsible for it. The above findings are also demonstrated experimentally in a very recent study on the diffusiophoretic motion of soft particles through porous collagen hydrogels. The results presented here are useful in various practical applications of soft particles like drug delivery.     

Photoinduced molecular rearrangements. Some comments on the ring‐photoisomerization of 1,2,4‐oxadiazoles into 1,3,4‐oxadiazoles

The ring‐photoisomerization of 3‐amino‐ and 3‐methylamino‐5‐phenyl‐1,2,4‐oxadiazoles into the corresponding 2‐amino‐ and 2‐methylamino‐5‐phenyl‐1,3,4‐oxadiazoles has been reinvestigated by examining the effect of a base on the photoreaction. On irradiating at λ = 254 nm in methanol, yields of the ring‐photoisomers were found to be significantly enhanced by the addition of triethylamine (TEA) in the photoreaction medium. By contrast, irradiation of the 3‐amino‐5‐phenyloxadiazole in acetonitrile containing TEA gave an almost complete photoreduction into benzoylguanidine, while few percent of the ring photoisomer were detected. Furthermore, the pyrene‐sensitized photolysis of 3‐amino‐5‐phenyloxadiazole in acetonitrile containing triethylamine also gave benzoylguanidine but no traces of the ring photoisomer.     

Densely-packed self-assembled monolayers on gold surfaces from a conformationally constrained helical hexapeptide

A novel hexapeptide was functionalized at the N-terminus by a lipoyl group for binding to gold substrates. Owing to the high content of α-aminoisobutyric acid residues, the peptide adopts a rigid helical conformation despite the shortness of its main chain. Binding of the peptide to gold was investigated by quartz crystal microbalance, cyclic voltammetry, X-ray photoelectron spectroscopy, and scanning tunneling microscopy under ultra-high vacuum conditions. Scanning tunneling microscopy experiments revealed that the peculiar self-assembly properties of this short helical peptide determine the complex morphology of the monolayer, showing ‘stripes’, i.e. peptide aggregates horizontally layered on the gold surface, and ‘holes’, i.e. Au vacancy islands coated by the peptide monolayer.     

Collective modes in a slab of interacting nuclear matter

We consider a slab of nuclear matter and investigate the collective excitations, which develop in the response function of the system. We introduce a finiterange realistic interaction among the nucleons, which reproduces the full G-matrix by a linear combination of gaussian potentials in the various spin-isospin channels. We then analyze the collective modes of the slab in theS=T=1 channel: for moderate momenta hard and soft zero-sound modes are found, which exhaust most of the excitation strength. At variance with the results obtained with a zero range force, new “massive” excitations are found for the vector-isovector channel.     

Synthesis of 3,5-disubstituted 1,2,4-triazoles containing trimethoxyphenyl groups: Potential antagonists of platelet activating factor

In an effort to develop a new class of Platelet Activating Factor antagonists, 3,5-disubstituted 1,2,4-triazoles containing trimethoxyphenyl groups have been synthesized. The synthesis of symmetrical triazoles 5 and 6 , as well as two methods of synthesizing unsymmetrical triazole 7 , are reported.     

“Parallel factor analysis of multi-excitation ultraviolet resonance Raman spectra for protein secondary structure determination”

Protein secondary structural analysis is important for understanding the relationship between protein structure and function, or more importantly how changes in structure relate to loss of function. The structurally sensitive protein vibrational modes (amide I, II, III and S) in deep-ultraviolet resonance Raman (DUVRR) spectra resulting from the backbone C–O and N–H vibrations make DUVRR a potentially powerful tool for studying secondary structure changes. Experimental studies reveal that the position and intensity of the four amide modes in DUVRR spectra of proteins are largely correlated with the varying fractions of α-helix, β-sheet and disordered structural content of proteins. Employing multivariate calibration methods and DUVRR spectra of globular proteins with varying structural compositions, the secondary structure of a protein with unknown structure can be predicted. A disadvantage of multivariate calibration methods is the requirement of known concentration or spectral profiles. Second-order curve resolution methods, such as parallel factor analysis (PARAFAC), do not have such a requirement due to the “second-order advantage.” An exceptional feature of DUVRR spectroscopy is that DUVRR spectra are linearly dependent on both excitation wavelength and secondary structure composition. Thus, higher order data can be created by combining protein DUVRR spectra of several proteins collected at multiple excitation wavelengths to give multi-excitation ultraviolet resonance Raman data (ME-UVRR). PARAFAC has been used to analyze ME-UVRR data of nine proteins to resolve the pure spectral, excitation and compositional profiles. A three factor model with non-negativity constraints produced three unique factors that were correlated with the relative abundance of helical, β-sheet and poly-proline II dihedral angles. This is the first empirical evidence that the typically resolved “disordered” spectrum represents the better defined poly-proline II type structure.     

Volatile fingerprints of artemisinin-rich Artemisia annua cultivars by headspace solid-phase microextraction gas chromatography/ mass spectrometry

The cultivar Anamed (A3) is a hybrid of Artemisia annua with a high content of the secondary metabolite artemisinin, a well-known antimalarial drug. Here we report for the first time the volatile profile of fresh leaves of this hybrid in comparison with that of Artemisia annua L. wild-type species. Evaluation and comparison of the volatile profiles of A. annua genotypes with different content in artemisinin were carried out by headspace solid-phase microextraction (HS-SPME) coupled with gas chromatography/mass spectrometry (GC/MS) that was performed on fresh leaves of the plants under investigation using a polydimethylsiloxane (PDMS) fiber. The chromatograms obtained from hybrids with a high content of artemisinin (A. annua cv. Anamed A3 and A. annua cv. Artemis F2) reveal the total absence of artemisia ketone, one of the major and characteristic compounds of the wild-type A. annua L., along with a significantly lower variety of volatile compounds. In conclusion, HS-SPME coupled with GC/MS is a very useful, non-destructive and efficient method to describe the volatile pattern of Artemisia annua cultivars. It represents a rapid screening method for the evaluation of volatile biomarkers like artemisia ketone, whose absence is typical of artemisinin-rich A. annua cultivars.     

Morphological and chemical characterization of weathering products on buried Sasanian glass from central Iraq

This paper discusses the morphological and chemical features of the weathering products on Sasanian glass finds excavated at the ancient Sasanian town of Veh Arda?īr, some 30 km south of Baghdad (Iraq), and dated from the third to the sixth century. All the considered fragments represent soda-lime glass, with MgO contents between 3% and 8%, resulting from the use of soda-rich plant ash as a flux; within this general frame, two productions can be distinguished due to their MgO to K₂O ratio. Four main alteration typologies were observed by visual examination of the excavated samples; these were studied by scanning electron microscopy, energy dispersive X-ray analysis, inductively coupled plasma-mass spectrometry, X-ray diffraction and thermal analysis. Different alteration features were generally observed for samples belonging to the two compositional groups. In particular, samples with higher MgO to K₂O ratios show definitely thinner crusts, associated with alteration plugs going down into the glass. Moreover, gray or black crusts are related to the presence of manganese at significant levels in the original glass.