Mass Spectral Analyses of Trimethylsilyl Glucuronic Acids

Mass spectral analysis of carbohydrates has become an important tool for the biological chemist^1–3 and the use of mass spectrometers interfaced with gas-liquid chromatographs has provided a convenient method of study for volatile derivatives of carbohydrates. Several groups^4–7 have accomplished separations of the various isomeric trimethylsilyl (TMSi) esters and ethers of the glucuronic acids. The present work utilizes a gas-liquid chromatograph-mass spectrometer to examine the previously unreported mass spectra of pertrimethylsilylated glucuronic acids and these spectra are compared to the previously reported⁸ spectra of the pemethylated glucuronic acids.     

Geographical influences of an emerging network of gang rivalries

We propose an agent-based model to simulate the creation of street gang rivalries. The movement dynamics of agents are coupled to an evolving network of gang rivalries, which is determined by previous interactions among agents in the system. Basic gang data, geographic information, and behavioral dynamics suggested by the criminology literature are integrated into the model. The major highways, rivers, and the locations of gangs’ centers of activity influence the agents’ motion. We use a policing division of the Los Angeles Police Department as a case study to test our model. We apply common metrics from graph theory to analyze our model, comparing networks produced by our simulations and an instance of a Geographical Threshold Graph to the existing network from the criminology literature.     

Iridium-Catalyzed Formyl-Selective Deuteration of Aldehydes

We report the first direct catalytic method for formyl-selective deuterium labeling of aromatic aldehydes under mild conditions, using an iridium-based catalyst designed to favor formyl over aromatic C−H activation. A good range of aromatic aldehydes is selectively labeled, and a one-pot labeling/olefination method is also described. Computational studies support kinetic product control over competing aromatic labeling and decarbonylation pathways.     

Halogenation of 2-Hydroxynicotinic Acid

A convenient method to prepare 5-halo-2-hydroxy-nicotinic acid is described.     

Chromium(V) Oxide Trichloride,and some Pentachlorido‐­oxido‐chromate(V) Salts: Structures and Spectroscopic ­Characterization

Crystalline CrOCl₃ contains [Cl₂OCr(μ‐Cl)₂CrOCl₂] molecules with two square pyramidal CrOCl₄ units sharing a common edge and with the Cr–O arranged anti, a new structure type for transition metal MOX₃ compounds. Crystals are monoclinic with space group P2₁/c, Z = 4, with a = 5.735(5), b = 13.738(7), c = 11.318(4) Å, α = 90°, β = 98.346(6)°, γ = 90°. Its IR and UV/Vis spectra are reported and compared with those of the C_3v monomer found in the gas phase. Structures are also reported for M₂[CrOCl₅] (M = Cs or Rb) and show a pseudo‐octahedral anion. Cs₂[CrOCl₅] adopts a K₂PtCl₆‐type structure with [CrOCl₅]^2– ions randomly orientated, but Rb₂[CrOCl₅] is orthorhombic with space group Pnma with a = 13.6471(7), b = 9.9175(5), and c = 6.9562(4) Å. Rietveld refinement of the data on the rubidium salt gave Cr–O = 1.628(1), Cr–Cl_transO = 2.652(7), Cr–Cl_transCl = 2.239(8)–2.342(3) Å. Corresponding Cr^V oxide bromide species do not form.     

Stereoselective Remote Functionalization via Palladium-Catalyzed Redox-Relay Heck Methodologies

Exploration of novel, three-dimensional chemical space is of growing interest in the drug discovery community and with this comes the challenge for synthetic chemists to devise new stereoselective methods to introduce chirality in a rapid and efficient manner. This Minireview provides a timely summary of the development of palladium-catalyzed asymmetric redox-relay Heck-type processes. These reactions represent an important class of transformation for the selective introduction of remote stereocenters, and have risen to prominence over the past decade. Within this Minireview, the vast scope of these transformations will be showcased, alongside applications to pharmaceutically relevant chiral building blocks and drug substances. To complement this overview, a mechanistic summary and discussion of the current limitations of the transformation are presented, followed by an outlook on future areas of investigation.     

How well does molecular simulation reproduce environment-specific conformations of the intrinsically disordered peptides PLP,TP2 and ONEG?

Understanding the conformational ensembles of intrinsically disordered proteins and peptides (IDPs) in their various biological environments is essential for understanding their mechanisms and functional roles in the proteome, leading to a greater knowledge of, and potential treatments for, a broad range of diseases. To determine whether molecular simulation is able to generate accurate conformational ensembles of IDPs, we explore the structural landscape of the PLP peptide (an intrinsically disordered region of the proteolipid membrane protein) in aqueous and membrane-mimicking solvents, using replica exchange with solute scaling (REST2), and examine the ability of four force fields (ff14SB, ff14IDPSFF, CHARMM36 and CHARMM36m) to reproduce literature circular dichroism (CD) data. Results from variable temperature (VT) ¹H and Rotating frame Overhauser Effect SpectroscopY (ROESY) nuclear magnetic resonance (NMR) experiments are also presented and are consistent with the structural observations obtained from the simulations and CD. We also apply the optimum simulation protocol to TP2 and ONEG (a cell-penetrating peptide (CPP) and a negative control peptide, respectively) to gain insight into the structural differences that may account for the observed difference in their membrane-penetrating abilities. Of the tested force fields, we find that CHARMM36 and CHARMM36m are best suited to the study of IDPs, and accurately predict a disordered to helical conformational transition of the PLP peptide accompanying the change from aqueous to membrane-mimicking solvents. We also identify an α-helical structure of TP2 in the membrane-mimicking solvents and provide a discussion of the mechanistic implications of this observation with reference to the previous literature on the peptide. From these results, we recommend the use of CHARMM36m with the REST2 protocol for the study of environment-specific IDP conformations. We believe that the simulation protocol will allow the study of a broad range of IDPs that undergo conformational transitions in different biological environments.

A protocol for simulating intrinsically disordered peptides in aqueous and hydrophobic solvents is proposed. Results from four force fields are compared with experiment. CHARMM36m performs the best for the simulated IDPs in all environments.     

An efficient and scalable process to produce morpholine-d8

Incorporation of isotopes has long been used as a research tool to label carbons and elucidate biochemical pathways. More recently, H→D exchange has led to analogs of therapeutic agents with improved metabolic stability and properties. Such compounds also have the potential for an improved drug/drug interaction profile and may even avoid the formation of toxic metabolites. Hence, a clear need for an efficient access to deuterated intermediates on large scale has emerged. In the context of an ongoing drug discovery program, we required large quantities of morpholine-d₈. We herein report the successful optimization of a one-pot process allowing a near complete exchange of all methylene hydrogens in morpholine to deuterium atoms using D₂O as the sole source of deuterium and Raney Nickel as catalyst. This facile and safe protocol will be used to scale up the synthesis of morpholine-d₈ in due course.     

Pulse compression and gain enhancement in a degenerate optical parametric amplifier based on aperiodically poled crystals

We describe theoretically a method of obtaining pulse compression and simultaneously improving amplification in a degenerate optical parametric amplifier by use of quasi-phase-matched engineered crystals. The scheme combines the possibility of increasing the signal spectral bandwidth that is offered by a degenerate parametric amplifier with the ability of engineered aperiodically poled crystals to compensate for group-velocity mismatch.     

Solubility of solid mixtures in supercritical fluids

Kurnik, R.T. and Reid, R.C., 1982. Solubility of solid mixtures in supercritical fluids. Fluid Phase Equilibria, 8: 93-105Supercritical fluids are receiving widespread attention as possible extraction agents for relatively non-volatile solids and liquids. Previous studies of the solubility of solids in supercritical fluids have been limited to pure solids. These pure-component data are interesting and indicate novel properties of supercritical fluids in this respect. The more general problem, however, lies in determining the solubility of multicomponent solids in supercritical fluids. Experimental data have now been obtained on the solubilities of binary, solid hydrocarbon mixtures in both supercritical carbon dioxide and supercritical ethylene. Most of the behavior exhibited by pure solids in supercritical fluids still exists for multicomponent solid solute systems (e.g., retrograde solidification, solubility extrema), but new phenomena were also found. The most interesting finding is that the solubility of a solid component when in a multicomponent solute system can be as much as 300% higher than the component solubility in a pure solid system at the same operating conditions. The multicomponent-solid-fluid data usually correlate well with thermodynamic theory.