Mesoscopic dynamics of diffusion-influenced enzyme kinetics

A particle-based mesoscopic model for enzyme kinetics is constructed and used to investigate the influence of diffusion on the reactive dynamics. Enzymes and enzyme-substrate complexes are modeled as finite-size soft spherical particles, while substrate, product, and solvent molecules are point particles. The system is evolved using a hybrid molecular dynamics-multiparticle collision dynamics scheme. Both the nonreactive and reactive dynamics are constructed to satisfy mass, momentum, and energy conservation laws, and reversible reaction steps satisfy detailed balance. Hydrodynamic interactions among the enzymes and complexes are automatically accounted for in the dynamics. Diffusion manifests itself in various ways, notably in power-law behavior in the evolution of the species concentrations. In accord with earlier investigations, regimes where the product production rate exhibits either monotonic or nonmonotonic behavior as a function of time are found. In addition, the species concentrations display both t(-1/2) and t(-3/2) power-law behavior, depending on the dynamical regime under investigation. For high enzyme volume fractions, cooperative effects influence the enzyme kinetics. The time dependent rate coefficient determined from the mass action rate law is computed and shown to depend on the enzyme concentration. Lifetime distributions of substrate molecules newly released in complex dissociation events are determined and shown to have either a power-law form for rebinding to the same enzyme from which they were released or an exponential form for rebinding to different enzymes. The model can be used and extended to explore a variety of issues related concentration effects and diffusion on enzyme kinetics.     

A Mechanisms and Kinetics Study of Polymeric Thin-Film Deposition in Glow Discharge

Polymeric thin-film deposition in a capacitively coupled rf glow discharge of styrene has been investigated. A kinetic scheme for the polymerization was proposed in which initiation of monomers by electron impact was followed by propagation and termination as in conventional polymerization, the initiation rate constant being a function of electron temperature alone. Four mechanism models were examined, depending on where each reaction step takes place: in the gas phase or on the substrate. Free-radical polymerization was assumed. Experiments were carried out at pressures ranging from 0.25 to 1.05 Torr and at voltages and currents that yielded cold and stable discharges. Substrate temperature was controlled. Deposition rate was determined by weighing. A regression program was used in addition to experimental tests in which substrate temperature was varied. The best approximation to the plasma polymer deposition process was found to be the following model: monomers are activated in the gas phase by electron bombardment and subsequently diffuse to the substrate where they propagate and terminate, adsorption of monomers on the substrate playing an important role. A rate expression relating polymer film deposition rate to the experimental variables is presented.     

STRUCTURE STERIQUE DES COMPOSES CYCLIQUES DU PHOSPHORE. XIII. ETUDE PAR MOMENT DIPOLAIRE DES OXO-2 ET THIO-2 PERHYDRO OXAZAPHOSPHORINES-1,3,2

Abstract

L'étude par moment dipolaire de la conformation de huit perhydro oxazaphosphorines-1,3,2 est décrite. The conformation of eight perhydro 1,3,2-oxazaphosphorines is studied by means of dipole moments.     

VICINAL DIBROMO-1-HYDROXYPHOSPHOLANE 1-OXIDES

Abstract

2,3-Dibromo-1-hydroxyphospholane 1-oxide and 3,4-dibromo-1-hydroxyphospholane 1-oxide were prepared in high yield by bromine addition to 1-hydroxyphosphol-2-ene 1-oxide or 1-hydroxyphosphol-3-ene 1-oxide, respectively. Both compounds were characterized by ¹H, ³¹P and ¹³C nmr, IR, Laser Raman and mass spectrometry.     

Synthesis and Application of Hydride Silica Composites for Rapid and Facile Removal of Aqueous Mercury

The adsorption of ionic mercury(II) from aqueous solution on functionalized hydride silicon materials was investigated. The adsorbents were prepared by modification of mesoporous silica C‐120 with triethoxysilane or by converting alkoxysilane into siloxanes by reaction with acetic acid. Mercury adsorption isotherms at 20 °C are reported, and maximum mercury loadings were determined by Langmuir fitting. Adsorbents exhibited efficient and rapid removal of ionic mercury from aqueous solution, with a maximum mercury loading of approximately 0.22 and 0.43 mmol of Hg g^?1 of silica C‐120 and polyhedral oligomeric silsesquioxane (POSS) xerogel, respectively. Adsorption efficiency remained almost constant from pH 2.7 to 7. These inexpensive adsorbents exhibiting rapid assembly, low pH sensitivity, and high reactivity and capacity, are potential candidates as effective materials for mercury decontamination in natural waters and industrial effluents.     

Synthesis and MRSA PK inhibitory activity of thiazole containing deoxytopsentin analogues

The public health care crisis caused by the emergence of drug resistant bacterial strains, e.g., methicillin resistant Staphylococcus aureus (MRSA) has underlined the urgent need to accelerate the discovery of new chemical entities active against antibiotic resistant bacteria. We report here the synthesis of a series thiazole containing deoxytopsentin analogues, which show moderate activity against a target MRSA pyruvate kinase enzyme: an evolutionary conserved hub protein critical for bacterial survival. A Hantzsch thiazole coupling between α-oxo-1H-indole-3-thioacetamides and 2-bromo-1-(1H-indol-3-yl)-ethanones provided facile access to the thiazole containing deoxytopsentin compounds.     

Fluorescent 2-(2′-hydroxybenzofuran)benzoxazole (HBBO) borate complexes: synthesis,optical properties,and theoretical calculations

The multi-step synthesis, structural and optical properties of original luminescent borate complexes derived from 2-(2′-hydroxybenzofuran)benzoxazole (HBBO) are reported. Functionalization at position 3 of the benzofuran ring was readily achieved through an electrophilic cyclization key step followed by a Sonogashira cross-coupling reaction. The optical properties of the resulting boron difluoride dyes highlight different photophysical behaviors depending on the nature of the substitution at position 3 of the benzofuran core (^tBu-phenylacetylene or NⁿBu₂-phenylacetylene). The NⁿBu₂-phenylacetylene moiety favors a sizeable intramolecular charge transfer as evidenced by a strong solvatochromism; a feature further confirmed by ab initio calculations.