On Inexact Relative-Error Hybrid Proximal Extragradient,Forward-Backward and Tseng’s Modified Forward-Backward Methods with Inertial Effects

Set-Valued and Variational Analysis - For solving monotone inclusion problems, we propose an inertial under-relaxed version of the relative-error hybrid proximal extragradient method. We study the...     

Optimisation of a key cross-coupling reaction towards the synthesis of a promising antileishmanial compound

During the course of a research program aimed at identifying novel antileishmanial compounds, a multi-gram synthesis of N-(trans-4-((4-methoxy-3-((R)-3-methylmorpholino)-1H-pyrazolo[3,4-d]pyrimidin-6-yl)amino)cyclohexyl)-2-methylpropane-1-sulfonamide ((R)-1) was required. This letter describes optimisation of the reaction conditions and protecting group strategy for a key Buchwald-Hartwig coupling, delivering the required quantities of (R)-1, as well as further compounds in the series.     

Blocking and Dimer Processes on the Cayley Tree

We show that the equilibrium distribution for the dimer process on the finite Cayley tree tends to a translation invariant limit as the size of the tree tends to infinity. The same is true for the blocking process except when there is a phase transition, in which case there are two limits, each a one-step translation of the other. We also find correlations for occupation probabilities.     

Versatile vacuum chamber for in situ surface X‐ray scattering studies

A compact portable vacuum‐compatible chamber designed for surface X‐ray scattering measurements on beamline ID01 of the European Synchrotron Radiation Facility, Grenoble, is described. The chamber is versatile and can be used for in situ investigation of various systems, such as surfaces, nanostructures, thin films etc., using a variety of X‐ray‐based techniques such as reflectivity, grazing‐incidence small‐angle scattering and diffraction. It has been conceived for the study of morphology and structure of semiconductor surfaces during ion beam erosion, but it is also used for the study of surface oxidation or thin film growth under ultra‐high‐vacuum conditions. Coherent X‐ray beam experiments are also possible. The chamber is described in detail, and examples of its use are given.     

Three‐Dimensional Branched and Faceted Gold–Ruthenium Nanoparticles: Using Nanostructure to Improve Stability in Oxygen Evolution Electrocatalysis

Achieving stability with highly active Ru nanoparticles for electrocatalysis is a major challenge for the oxygen evolution reaction. As improved stability of Ru catalysts has been shown for bulk surfaces with low‐index facets, there is an opportunity to incorporate these stable facets into Ru nanoparticles. Now, a new solution synthesis is presented in which hexagonal close‐packed structured Ru is grown on Au to form nanoparticles with 3D branches. Exposing low‐index facets on these 3D branches creates stable reaction kinetics to achieve high activity and the highest stability observed for Ru nanoparticle oxygen evolution reaction catalysts. These design principles provide a synthetic strategy to achieve stable and active electrocatalysts.     

Intra- vs intermolecular hydrogen bonding. The crystal structure of 5-methyl-2-hydroxyacetophenone thiosemicarbazone monohydrate and salicylaldehyde-2-methylthiosemicarbazone monohydrate

The crystal structure of 5-methyl-acetophenonethiosemicarbazone monohydrate,A, and salicylaldehyde-2-methylthiosemicarbazone monohydrate,B, were determined using single crystal X-ray diffraction.A crystallizes in the monoclinic space groupC2/c, with lattice parametersa=14.161(2),b=15.753(1) ?,c=11.084(1) ?, β=112.59(1)° andZ=4, yielding a calculated density ofD _calc=1.352 mg/m³.B crystallizes in the triclinic space groupP1, witha=7.233(2) ?,b=7.371(2) ?,c=11.841(2) ?, α=82.77(2)°, β=78.33(2)°, γ=63.06(2)° andD _calc=1.371 mg/m³ forZ=2,. In bothA andB the immine nitrogen and the sulfur atom areanti with respect to N2-C8. WhileA presents the usual intramolecular six membered hydrogen bond ring,B has instead an intermolecular hydrogen bond between the hydroxy moiety of the salicyladehyde and a water molecule. AM1 calculations agree with the experimental conformations observed in both compounds. Contribution No. 1619 of the Instituto de Química, UNAM.     

Cycloreversion of azetidines via oxidative electron transfer. steady-state and time-resolved studies

Cycloreversion of cis- and trans-1,2,3-triphenylazetidine (c-2 and t-2) is achieved by electron transfer to (tris(4-bromophenyl)aminium radical cation (5 (*+)). Stepwise C-N and C-C bond cleavage of azetidine radical cations leads to cis- and trans-stilbene, together with N-benzylideneaniline, as final products. Mechanistic evidence is provided by quenching studies, using laser flash photolysis to generate 5 (*+) from its neutral precursor.     

Determination of PASHs by various analytical techniques based on gas chromatography-mass spectrometry: application to a biodesulfurization process

Polycyclic aromatic sulphur heterocyclic (PASH) compounds, such as dibenzothiophene (DBT) and alkylated derivatives are used as model compounds in biodesulfurization processes. The development of these processes is focused on the reduction of the concentration of sulphur in gasoline and gas–oil [D.J. Monticello, Curr. Opin. Biotechnol. 11 (2000) 540], in order to meet European Union and United States directives.

The evaluation of biodesulfurization processes requires the development of adequate analytical techniques, allowing the identification of any transformation products generated. The identification of intermediates and final products permits the evaluation of the degradation process.

In this work, seven sulfurated compounds and one non-sulfurated compound have been selected to develop an extraction method and to compare the sensitivity and identification capabilities of three different gas chromatography ionization modes. The selected compounds are: dibenzothiophene (DBT), 4-methyl-dibenzothiophene (4-m-DBT), 4,6-dimethyl-dibenzothiophene (4,6-dm-DBT) and 4,6 diethyl-dibenzothiophene (4,6 de-DBT), all of which can be used as model compounds in biodesulfurization processes; as well as dibenzothiophene sulfoxide (DBTO₂), dibenzothiophene sulfone (DBTO) and 2-(2-hydroxybiphenyl)-benzenesulfinate (HBPS), which are intermediate products in biodesulfurization processes of DBT [ A. Alcon, V.E. Santos, A.B. Martín, P. Yustos, F. García-Ochoa, Biochem. Eng. J. 26 (2005) 168]. Furthermore, a non-sulfurated compound, 2-hydroxybiphenyl (2-HBP), has also been selected as it is the final product in the biodesulfurization process of DBT [A. Alcon, V.E. Santos, A.B. Martín, P. Yustos, F. García-Ochoa. Biochem. Eng. J. 26 (2005) 168].

Since, typically, biodesulfurization reactions take place in a biphasic medium, two extraction methods have been developed: a liquid–liquid extraction method for the watery phase and a solid phase extraction method for the organic phase. Recoveries of the selected compound in both media were studied. They were in the range of 80–100% for the watery and in the range of 40–60% for the organic phase, respectively.

Gas chromatography coupled to mass spectrometry (GC–MS) has been employed for the identification of these selected compounds. Three different ionization modes were applied: conventional electron impact (EI); positive chemical ionization (PCI), using methane as the reagent gas; and a recently developed ionization mode known as hybrid chemical ionization (HCI), using perfluorotri-n-butylamine as the reagent gas. Limits of detection and identification capabilities have been compared between the three analytical techniques.

The sensitivity of the three analytical techniques was studied and LOD between 0.05 and 1, between 0.09 and 2 and between 0.001 and 0.043 were achieved for PCI, EI and HCI, respectively.

The developed method was applied in samples from a biodesulfurization process. The biodesulfurization reactions were conducted in resting cell operation mode, using Erlenmeyer flasks or an agitated tank bioreactor. The microorganism employed was Pseudomonas putida CECT 5279. The reaction was performed under controlled air flow, stirring and temperature conditions.     

The Biochemical Mechanisms of Antimicrobial Photodynamic Therapy†

The unbridled dissemination of multidrug-resistant pathogens is a major threat to global health and urgently demands novel therapeutic alternatives. Antimicrobial photodynamic therapy (aPDT) has been developed as a promising approach to treat localized infections regardless of drug resistance profile or taxonomy. Even though this technique has been known for more than a century, discussions and speculations regarding the biochemical mechanisms of microbial inactivation have never reached a consensus on what is the primary cause of cell death. Since photochemically generated oxidants promote ubiquitous reactions with various biomolecules, researchers simply assumed that all cellular structures are equally damaged. In this study, biochemical, molecular, biological and advanced microscopy techniques were employed to investigate whether protein, membrane or DNA damage correlates better with dose-dependent microbial inactivation kinetics. We showed that although mild membrane permeabilization and late DNA damage occur, no correlation with inactivation kinetics was found. On the other hand, protein degradation was analyzed by three different methods and showed a dose-dependent trend that matches microbial inactivation kinetics. Our results provide a deeper mechanistic understanding of aPDT that can guide the scientific community toward the development of optimized photosensitizing drugs and also rationally propose synergistic combinations with antimicrobial chemotherapy.