Organo‐Palladium(II)‐Verbindungen mit PdC4‐Koordination: Phenylethinyl‐ und Methylphenylethinylkomplexe

Tetrakis(p‐tolyl)oxalamidinato‐bis[acetylacetonatopalladium(II)] ([Pd₂(acac)₂(oxam)]) reacted with Li–C≡C–C₆H₅ in THF with formation of [Pd(C≡C–C₆H₅)₄Li₂(thf)₄] ( 1a ). Reaction of [Pd₂(acac)₂(oxam)] with a mixture of 6 equiv. Li–C≡C–C₆H₅ and 2 equiv. LiCH₃ resulted in the formation of [Pd(CH₃)(C≡C–C₆H₅)₃Li₂(thf)₄] ( 2 ), and the dimeric complex [Pd₂(CH₃)₄(C≡C–C₆H₅)₄Li₄(thf)₆] ( 3 ) was isolated upon reaction of [Pd₂(acac)₂(oxam)] with a mixture of 4 equiv. Li–C≡C–C₆H₅ and 4 equiv. LiCH₃. 1 – 3 are extremely reactive compounds, which were isolated as white needles in good yields (60–90%). They were fully characterized by IR, ¹H‐, ¹³C‐, ⁷Li‐NMR spectroscopy, and by X‐ray crystallography of single crystals. In these compounds Li ions are bonded to the two carbon atoms of the alkinyl ligand. 1a reacted with Pd(PPh₃)₄ in the presence of oxygen to form the already known complexes trans‐[Pd(C≡C–C₆H₅)₂(PPh₃)₂] and [Pd(η²‐O₂)(PPh₃)₂]. In addition, 1a is an active catalyst for the Heck coupling reaction, but less active in the catalytic Sonogashira reaction.     

Exploring the functional interaction between POSH and ALIX and the relevance to HIV-1 release

Background

The ALG2-interacting protein X (ALIX)/AIP1 is an adaptor protein with multiple functions in intracellular protein trafficking that plays a central role in the biogenesis of enveloped viruses. The ubiquitin E3-ligase POSH (plenty of SH3) augments HIV-1 egress by facilitating the transport of Gag to the cell membrane. Recently, it was reported, that POSH interacts with ALIX and thereby enhances ALIX mediated phenotypes in Drosophila.

Results

In this study we identified ALIX as a POSH ubiquitination substrate in human cells: POSH induces the ubiquitination of ALIX that is modified on several lysine residues in vivo and in vitro. This ubiquitination does not destabilize ALIX, suggesting a regulatory function. As it is well established that ALIX rescues virus release of L-domain mutant HIV-1, HIV-1Δ_PTAP, we demonstrated that wild type POSH, but not an ubiquitination inactive RING finger mutant (POSH^V14A), substantially enhances ALIX-mediated release of infectious virions derived from HIV-1Δ_PTAP L-domain mutant (YPX_nL-dependent HIV-1). In further agreement with the idea of a cooperative function of POSH and ALIX, mutating the YPX_nL-ALIX binding site in Gag completely abrogated augmentation of virus release by overexpression of POSH. However, the effect of the POSH-mediated ubiquitination appears to be auxiliary, but not necessary, as silencing of POSH by RNAi does not disturb ALIX-augmentation of virus release.

Conclusion

Thus, the cumulative results identified ALIX as an ubiquitination substrate of POSH and indicate that POSH and ALIX cooperate to facilitate efficient virus release. However, while ALIX is obligatory for the release of YPX_nL-dependent HIV-1, POSH, albeit rate-limiting, may be functionally interchangeable.     

Cover Picture: Tuning the Rates of Long‐Range Charge Transfer across Phenylene Wires (ChemPhysChem 8/2009)

The central part of the cover picture shows that the rates for long‐range charge transfer across covalent phenylene bridges can be very sensitive to the chemical substituents attached to the individual bridging units. The peripheral parts of the picture illustrate the flash–quench technique employed to investigate intramolecular charge transfer between a phenothiazine donor and a photochemically generated ruthenium(III) complex. On page 1203 , M. E. Walther and O. S. Wenger explain their experimental findings in terms of donor‐bridge energy matching for hole transfer.

     

Dispersing hash functions

We define a family of functions F from a domain U to a range R to be dispersing if for every set S ? U of a certain size and random h ∈ F, the expected value of ∣S∣ – ∣h[S]∣ is not much larger than the expectation if h had been chosen at random from the set of all functions from U to R. We give near‐optimal upper and lower bounds on the size of dispersing families and present several applications where using such a family can reduce the use of random bits compared to previous randomized algorithms. A close relationship between dispersing families and extractors is exhibited. This relationship provides good explicit constructions of dispersing hash functions for some parameters, but in general the explicit construction is left open. © 2008 Wiley Periodicals, Inc. Random Struct. Alg., 2009     

Optimization of Optimal Power Flow Problems

Optimal power flow problems arise in the context of the optimization and secure exploitation of electrical power in alternating current (AC) networks. This optimization problem evaluates the flow on each line and to ensure that they are under line thermal limits. To improve the reliability of the power supply, a secure network is necessary, i.e., it has to be able to cope with some contingencies. Nowadays high performance solution methods, that are based on nonlinear programming algorithms, search for an optimal state while considering certain contingencies. According to the number of contingencies the problem size increases linearly. As the base case can already be large-scaled, the optimization time computation increases quickly. Parallelization seems to be a good way to solve quickly this kind of problem. This paper considers the minimization of an objective function and at least two constraints at each node. This optimization problem is solved by IPOPT, an interior point method, coupled with ADOL-C, an algorithmic differentiation tool, and MA27, a linear solver. Several results on employed parallelizing strategies will be discussed. (© 2011 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim)     

Probing particle size distributions in natural surface waters from 15 nm to 2 microm by a combination of LIBD and single-particle counting

We present a technique for measuring colloid size distributions between 15 nm and 2 microm at concentrations relevant to natural surface waters. Two particle-measuring methods are combined: laser-induced breakdown detection (LIBD), which allows the quantification of colloid size distributions below 400 nm, and a commercial single-particle counter that extends the accessible size range up to two mum. Centrifugation was used in order to separate micrometer sized particles for the LIBD measurement. The feasibility is demonstrated on water of Lake Brienz (Switzerland) and the River Pfinz (Germany) and the particle size distributions follow Pareto's law even down to 15 nm in both cases.     

Some guidelines for the analysis of genomic DNA by PCR-LC-ESI-MS

Ion-pair reversed-phase high-performance liquid chromatography online hyphenated to electrospray ionization mass spectrometry (ICEMS) represents an efficient method for the characterization of nucleic acids amplified by polymerase chain reaction (PCR). Since sample preparation is limited to PCR, the optimization of its solution conditions is of utmost importance for efficient mass spectrometric detection. The compatibility of a number of different commercially available PCR components including DNA polymerases, deoxynucleotide triphosphates, bovine serum albumin, enhancer, and ionic buffers was evaluated. These experiments revealed that higher concentration of enhancer and detergents such as Tween-20 or Nonidet P-40 impairs the mass spectrometric detection of nucleic acids and should be avoided within the PCR mixture. The optimized analytical platform was applied to the characterization of PCR products covering parts of the first hypervariable region of the noncoding mitochondrial control region. Truncated amplicons were detected attributable to the use of low quality primers. Furthermore, due to the proofreading activity of the applied polymerase system, mismatches between the primer and the target sequence located at the last or the second last base at the 3'-end of primers were corrected and detected within the corresponding amplicons.     

The significance of the Golgi complex in envelopment of bovine herpesvirus 1 (BHV-1) as revealed by cryobased electron microscopy

Nucleocapsids of herpesviruses originate in the nucleus of host cells and bud through the inner nuclear membrane acquiring tegument and envelope. The release of the enveloped virus particle from the perinuclear space is unknown. Cryobased electron microscopic imaging revealed enveloped virus particles within cisterns associated with the perinuclear space, a pre-Golgi compartment connecting Golgi cisterns to the perinuclear space, and enveloped virus particles in Golgi cisterns where they are packaged into transport vacuoles by membrane fission. To our knowledge, our images show for the first time the connectivity from the perinuclear space to Golgi cisterns. The data strongly indicate an intracisternal transport of enveloped virus particles from the budding site to the packaging site. Budding starts by condensation at the inner membrane. Condensation involving the viral envelope and peripheral tegument was persistent in virus particles within perinuclear space and associated cisterns. Virus particles within Golgi cisterns and transport vacuoles originating by Golgi membrane fission, however, lacked condensation. Instead, spikes were clearly evident. The phenomenon of condensation is considered likely to be responsible for preventing fusion of the viral envelope with cisternal membranes and/or for driving virions from the perinuclear space to Golgi cisterns. Glycoprotein K is discussed to likely play a role in the intracisternal transportation of virions. In addition to the pathway including intracisternal transport and packaging, there were clear indications for the well-known pathway involving wrapping of cytoplasmic nucleocapsids by Golgi membranes. The origin of the cytoplasmic nucleocapsids, however, remains obscure. Lack of evidence for release of nucleocapsids at the outer nuclear membrane suggests that the process is very rapid, or that nucleocapsids pass the nucleocytoplasmic barrier via an alternative route.     

Applicability of tandem mass spectrometry to the automated comparative sequencing of long-chain oligonucleotides

An algorithm for the comparative sequencing (COMPAS) of oligonucleotides is shown to be suitable for the sequence verification of nucleic acids ranging in length from a few to 80 nucleotides. The algorithm is based on the matching of a fragment ion spectrum generated by collision-induced dissociation to m/z values predicted from a known reference sequence employing established fragmentation pathways. Prior to mass spectrometric investigation, the oligonucleotides were on-line purified by ion-pair reversed-phase high-performance liquid chromatography using monolithic separation columns. This study evaluated the potential and the limits of COMPAS regarding the length and the charge state of oligonucleotides, the selected collision energy, and the analyzed amount of sample using a quadrupole ion trap mass spectrometer. The results revealed that oligonucleotides could be very reliably re-sequenced up to 60-mers, although the algorithm was successfully used to even verify sequences up to 80-mers. The relative collision energy was typically in the range between 13 and 20%, which allowed in most cases a verification of the reference sequence in a window of at least three consecutive collision energies. To select a proper charge state for fragmentation, a compromise had to be found between high signal intensity and low charge state. Furthermore, by reducing the eluent flow rate during elution of the oligonucleotide, the sequence of a 50-mer was successfully verified from the analysis of 295 fmol of the raw product. COMPAS was proven to be reproducible and was applied to the genotyping of the polymorphic, Y-chromosomal locus M9 contained in a 62-base pair polymerase chain reaction product.     

Alterations of lipoxygenase specificity by targeted substrate modification and site-directed mutagenesis

BACKGROUND: Mammalian lipoxygenases (LOXs) are categorised with respect to their positional specificity of arachidonic acid oxygenation. However, the mechanistic basis for this classification is not well understood. To gain a deeper insight into the structural basis of LOX specificity we determined the reaction characteristics of wild-type and mutant mammalian LOX isoforms with native and synthetic fatty acids substrates. RESULTS: The rabbit 15-LOX is capable of catalysing major 12-lipoxygenation when the volume of the substrate-binding pocket is enlarged. These alterations in the positional specificity can be reversed when bulky residues are introduced at the omega end of the substrate. Simultaneous derivatisation of both ends of fatty acids forces a 15-LOX-catalysed 5-lipoxygenation and this reaction involves an inverse head-to-tail substrate orientation. In contrast, for arachidonic acid 5-lipoxygenation by the human 5-LOX the substrate fatty acid may not be inversely aligned. The positional specificity of this isoenzyme may be related to its voluminous substrate-binding pocket. Site-directed mutagenesis, which leads to a reduction of active site volume, converts the 5-LOX to a 15-lipoxygenating enzyme species. CONCLUSIONS: The positional specificity of LOXs is not an invariant enzyme property but depends on the substrate structure and the volume of the substrate-binding pocket. 15-LOX-catalysed 5-lipoxygenation involves an inverse substrate alignment but this may not be the case for 5-LOXs. Thus, both theories for the mechanistic basis of 5-lipoxygenation (straight and inverse substrate orientation) appear to be correct for different LOX isoforms.