Four-dimensional NMR spectroscopy of a 723-residue protein: chemical shift assignments and secondary structure of malate synthase g

A four-dimensional (4-D) NMR study of Escherichia coli malate synthase G (MSG), a 723-residue monomeric enzyme (81.4 kDa), is described. Virtually complete backbone (1)HN, (15)N, (13)C, and (13)C(beta) chemical shift assignments of this largely alpha-helical protein are reported. The assignment strategy follows from our previously described approach based on TROSY triple resonance 4-D NMR spectroscopy [Yang, D.; Kay, L. E. J. Am. Chem. Soc. 1999, 121, 2571-2575. Konrat, R; Yang, D; Kay, L. E. J. Biomol. NMR 1999, 15, 309-313] with a number of modifications necessitated by the large size of the protein. A protocol for refolding deuterated MSG in vitro was developed to protonate the amides deeply buried in the protein core. Of interest, during the course of the assignment, an isoaspartyl linkage in the protein sequence was unambiguously identified. Chemical shift assignments of this system are a first step in the study of how the domains of the protein change in response to ligand binding and for characterizing the dynamical properties of the enzyme that are likely important for function.     

A highly atom economic, chemo-, regio- and stereoselective synthesis, and discovery of spiro-pyrido-pyrrolizines and pyrrolidines as antimycobacterial agents

The 1,3-dipolar cycloaddition of azomethine ylides derived from acenaphthenequinone and α-amino acids viz. proline, phenylglycine and sarcosine to a series of 1-methyl-3,5-bis[(E)-arylmethylidene]tetrahydro-4(1H)-pyridinones afforded novel spiro-pyrido-pyrrolizines and pyrrolidines chemo-, regio- and stereoselectively in quantitative yields. These compounds were screened for their in vitro activity against Mycobacterium tuberculosis H37Rv (MTB), multi-drug resistant Mycobacterium tuberculosis (MDR-TB) and Mycobacterium smegmatis using agar dilution method. Among the synthesized compounds, spiro-[2.2″]acenaphthene-1″-one-spiro[3.3′]-5′-(2-chlorophenylmethylidene)-1′-methyltetrahydro-4′(1H)-pyridinone-4-(2-chlorophenyl)hexahydro-1H-pyrrolizine (3e) was found to be the most active with a minimum inhibitory concentration (MIC) of 0.4 μg/mL against MTB and MDR-TB.     

Isolation and Densitometric HPTLC Method for Quantification of Belleric Acid in the Fruit Pericarp of Terminalia bellerica and its Formulations

JPC – Journal of Planar Chromatography – Modern TLC - For the first time a simple, sensitive, rapid, precise and accurate HPTLC method has been established for quantification of...     

Cobalt–Carbon Nanoparticles with Silica Support for Uptake of Cationic and Anionic Dyes from Polluted Water

Silica-supported hierarchical graphitic carbon sheltering cobalt nanoparticles Co-HGC@SiO₂ (1) were prepared by pyrolysis at 850 °C of [Co(phen)(H₂O)₄]SO₄·2H₂O complex with silica in the presence of pyrene as a carbon source under nitrogen atmosphere. Nanocomposites (2) and (3) were obtained by acid treatment of (1) with HCl and HF acid, respectively. The nanocomposites showed rough hierarchical carbon microstructures over silica support decorated with irregular cobalt nanospheres and nanorods 50 to 200 nm in diameter. The nanoparticles consist of graphitic shells and cobalt cores. SEM, EDAX and TEM elemental mapping indicate a noticeable loss of cobalt in the case of (2) and loss of cobalt and silica in the case of (3) with an increase in porosity. Nanocomposite (3) showed the highest BET surface area 217.5 m²g⁻¹. Raman spectrum shows defect D-band and graphitic G-band as expected in carbon nanostructures. PXRD reveals the presence of cobalt(0) nanoparticles. XPS indicates the presence of Co(II) oxides and the successful doping of nitrogen in the nanocomposites. Moreover, TEM elemental mapping provides information about the abundance of Si, Co, C, N and S elements in zones. Nanocomposite (1) showed maximum uptake capacity of 192.3 and 224.5 mg/g for crystal violet CV and methyl orange MO dyes, respectively. Nanocomposite (2) showed a capacity of 94.1 and 225.5 mg/g for CV and MO dyes, respectively. Nanocomposite (4) obtained after treatment of (1) with crystal violet proved successful adsorption of CV. Co-HGC (5) prepared without addition of silica has a capacity for CV equal to 192 mg/g, while it is 769.2 mg/g with MO. Electrostatics and π–π interactions of graphite and cobalt species in the nanocomposites with aromatic rings of cationic and anionic dyes are responsible for the adsorption. Yan et al. was the best model to describe column kinetics. The thomas column adsorption model showed that the maximum uptake capacity of (1) was 44.42 mg/g for CV and 32.62 mg/g for MO. for a column packed with 0.5 gm of (1) and dye concentration of 100 mg/L at a flow rate of 1 mL/min. The column was recycled three times with no noticeable clogging or degradation of nanocomposites. Thus, Co-HGC@SiO₂ adsorbents can be used efficiently to treat water contaminated with cationic and anionic dyes.     

Rapid point-of-care concentration of bacteria in a disposable microfluidic device using meniscus dragging effect

We report a low cost, disposable polymer microfluidic sample preparation device to perform rapid concentration of bacteria from liquid samples using enhanced evaporation targeted at downstream detection using surface enhanced Raman spectroscopy (SERS). The device is composed of a poly(dimethylsiloxane) (PDMS) liquid sample flow layer, a reusable metal airflow layer, and a porous PTFE (Teflon?) membrane sandwiched in between the liquid and air layers. The concentration capacity of the device was successfully demonstrated with fluorescently tagged Escherichia coli (E. coli). The recovery concentration was above 85% for all initial concentrations lower than 1 × 10(4) CFU mL(-1). In the lowest initial concentration cases, 100 μL initial volumes of bacteria solution at 100 CFU mL(-1) were concentrated into 500 nL droplets with greater than 90% efficiency in 15 min. Subsequent tests with SERS on clinically relevant Methicillin-Sensitive Staphylococcus aureus (MSSA) after concentration in this device proved more than 100-fold enhancement in SERS signal intensity compared to the signal obtained from the unconcentrated sample. The concentration device is straightforward to design and use, and as such could be used in conjunction with a number of detection technologies.     

Turmerin, the antioxidant protein from turmeric (Curcuma longa) exhibits antihyperglycaemic effects

A wide range of proteinaceous inhibitors are present in plants to protect themselves from hydrolytic enzymes. In this study, turmerin, a water-soluble peptide in turmeric rhizomes, was evaluated for its inhibitory potential against glucosidase and its antioxidant (AO) capacity. Turmerin inhibited α-amylase and α-glucosidase activities with IC?? values 31 and 192?μg?mL?1, respectively. Under the experimental conditions, those values for a standard glucosidase inhibitor, acarbose, were 81 and 296?μg?mL?1, respectively. The AO capacity of turmerin was evaluated using in vitro assay systems. Turmerin showed good DPPH (IC???=?29?μg?mL?1) and superoxide (IC???=?48?μg?mL?1) and moderate ABTS (IC???=?83?μg?mL?1) radical scavenging and Fe(II) chelation (IC???=?101?μg?mL?1) capacities. The inhibitory potential showed by turmerin against enzymes linked to type 2 diabetes, as well as its moderate AO capacity, could rationalise the traditional usage of turmeric rhizome preparations against diabetes.     

A simple and rapid high performance liquid chromatographic method with fluorescence detection for the estimation of fexofenadine in rat plasma--application to preclinical pharmacokinetics

A sensitive high performance liquid chromatographic (HPLC) method involving fluorescence detection was developed for the determination of fexofenadine (FEX), known to have low oral bioavailability, in rat plasma. In order to understand the effect of various chromatographic factors on the separation of analytes and to simultaneously optimize the resolution and analysis run time, a response surface method was used. The chromatographic separation was achieved using a Supelco C(18)-DB (250 mm x 4.6mm I.D./5 microm particle size) column with mobile phase comprising of ammonium acetate buffer and acetonitrile (63:37, v/v), delivered isocratically at a flow rate of 1.0 mL min(-1). Diphenhydramine was used as an internal standard (I.S.). The statistical evaluation of the method was examined and the method was found to be precise and accurate with a linearity range of 1-500 ng mL(-1) (r>0.9980). The intra- and inter-day precision studies showed good reproducibility with coefficients of variation (C.V.) less than 12.26%. The advantages of our method are small sample volume (100 microL), short time of analysis (13 min) and a simple sample extraction and clean-up as compared to the previously published methods. The established method provides a reliable bioanalytical methodology to carry out FEX pharmacokinetics in rat plasma.     

Sacrificial azomethine ylide cycloaddition controlled chemoselective nitrile oxide cycloaddition to 1-methyl-3,5-bis[(E)-arylmethylidene]tetrahydro-4(1H)-pyridinones: formation of mono-spiro-isoxazolines

The 1,3-dipolar cycloaddition of an azomethine ylide to 1-methyl-3,5-bis[(E)-arylmethylidene]tetrahydro-4(1H)-pyridinones afforded novel spiro-pyrrolidines in good yields. Further cycloaddition of these spiro-pyrrolidines with nitrile oxide afforded mono-spiro-isoxazolines in moderate yields (45-56%), presumably via a di-spiro intermediate, which undergoes a spontaneous cycloreversion of the spiro-pyrrolidine unit. In contrast, the direct cycloaddition of nitrile oxide to 1-methyl-3,5-bis[(E)-arylmethylidene]tetrahydro-4(1H)-pyridinones gave the mono-spiro-isoxazoline as the minor product, while the bis-spiro-isoxazolines are formed predominantly.     

The properties of Mn–CuFe2O4 spinel ferrite nanoparticles under various synthesis conditions

The structural, morphological, magnetic, dielectric, and gas analyzing properties are studied in CuFe₂O₄(Mn–CuFe₂O₄) substituted spinel ferrite nanoparticles synthesized via evaporation and automatic combustion. The obtained nanoparticles are established to possess a spherical shape. The smallest size of Mn–CuFe₂O₄ (~9 nm) nanoparticles is achieved at using automatic combustion. X-ray diffraction and Mössbauer spectroscopy reveal that the crystal lattice constant and the Mn–CuFe₂O₄ nanoparticle size are larger at augmenting the annealing temperature from 600 to 900°С. The dielectric permeability and losses of Mn–CuFe₂O₄ nanoparticles are studied at various synthesis conditions and temperatures of annealing. Various aspects of gas sensibility of synthesized Mn–CuFe₂O₄ nanoparticles are tested, as well. The maximum response to the presence of liquefied petroleum gas is 0.28 at the optimum working temperature of 300°C for Mn–CuFe₂O₄ nanoparticles obtained via automatic combustion and it is 0.23 at 250°C for deposited nanoparticles.

     

Water-soluble terpolymer-mediated calcium carbonate crystal modification

The structure of the polymeric substrate plays an important role in the nucleation of calcium carbonate crystals. In this study a synthetic water-soluble poly(acrylamide-co-2-acrylamido-2-methyl-1-propane sodium sufonate-co-n-vinyl pyrrolidone) was found to be a substrate favoring the nucleation of polymorphs of calcium carbonate crystals under specific experimental conditions. Morphological characterization of the polymorphs was done using atomic force microscopy, scanning electron microscopy, energy dispersive spectroscopy, FTIR analysis, and X-ray diffraction. If calcium carbonate is precipitated in the presence of terpolymer, a remarkable increase in nucleation density (number of crystals per unit area) was observed. Stacked crystals of rhombohedral morphology that formed may be due to the presence of sodium sulfonate groups on the terpolymer. However, in the presence of poly-L-aspartic acid, almost all crystals are hollow and have needlelike or plate like morphology was formed. This change in calcium carbonate morphology can be explained by the variation of the polymer conformation, if poly- L-aspartic acid is present.