Interior segment regrowth configurational-bias algorithm for the efficient sampling and fast relaxation of coarse-grained polyethylene and polyoxyethylene melts on a high coordination lattice

We demonstrate the application of a modified form of the configurational-bias algorithm for the simulation of chain molecules on the second-nearest-neighbor-diamond lattice. Using polyethylene and poly(ethylene-oxide) as model systems we show that the present configurational-bias algorithm can increase the speed of the equilibration by at least a factor of 2-3 or more as compared to the previous method of using a combination of single-bead and pivot moves along with the Metropolis sampling scheme [N. Metropolis, A. W. Rosenbluth, M. N. Rosenbluth, A. H. Teller, and E. Teller, J. Chem. Phys. 21, 1087 (1953)]. The increase in the speed of the equilibration is found to be dependent on the interactions (i.e., the polymer being simulated) and the molecular weight of the chains. In addition, other factors not considered, such as the density, would also have a significant effect. The algorithm is an extension of the conventional configurational-bias method adapted to the regrowth of interior segments of chain molecules. Appropriate biasing probabilities for the trial moves as outlined by Jain and de Pablo for the configurational-bias scheme of chain ends, suitably modified for the interior segments, are utilized [T. S. Jain and J. J. de Pablo, in Simulation Methods for Polymers, edited by M. Kotelyanskii and D. N. Theodorou (Marcel Dekker, New York, 2004), pp. 223-255]. The biasing scheme satisfies the condition of detailed balance and produces efficient sampling with the correct equilibrium probability distribution of states. The method of interior regrowth overcomes the limitations of the original configurational-bias scheme and allows for the simulation of polymers of higher molecular weight linear chains and ring polymers which lack chain ends.     

Dielectric Studies of Glycine–Ethylene Glycol–Water Solutions Using Time Domain Reflectometry

Time domain reflectometry (TDR) has been used for dielectric relaxation measurements on the glycine–ethylene glycol–water ternary system (TDR) at 25, 30, 35, and 40°C in the frequency range from 10 MHz to 10 GHz. Glycine–ethylene glycol–water solutions are prepared with different concentrations of ethylene glycol (0, 5, 10, 15, 20, and 30%) and also for different glycine molar concentrations (0, 0.2, 0.4, 0.6, 0.8, and 1 M). The dielectric relaxation parameters are measured for aqueous glycine solutions also to compare the results with those for the glycine–ethylene glycol–water ternary system. For all the solutions considered, only one relaxation peak was observed in this frequency range. The complex permittivity spectra for the aqueous glycine solutions can be well described by the Cole–Davidson expression, whereas that for the ternary system can be well described by the Havriliak–Negami expression. The logarithm of the relaxation time log() shows a nonlinear relation with the glycine molar concentration that implies a change in the relaxation mechanism with glycine concentration. The dielectric strength increases with an increase in glycine molar concentration, whereas it decreases with an increase in ethylene glycol concentration.     

Synthesis of α-hydroxy-β-lactams

A convenient synthesis of α-hydroxy-β-lactams has been devised that involves the annelation of an inline with benzyloxyacetyl chloride and triethylamine and subsequent hydrogenolysis in the presence of palladium on carbon. In most cases a cis-β-lactam was obtained. A thioimidate can also be used as the imino component in the annelation reaction but the hydrogenolysis step fails. The annelation of the appropriate thiazoline to a 6-epi-penicillin derivative occurred much more readily with benzyloxyacetyl chloride than with azidoacetyl chloride.     

Theoretical study of 3d‐metal mononitrides using DFT method

3d‐Metal mononitrides are studied using the density functional theory method. The lowest spin state for these dimers is obtained using the B3LYP hybrid functional with the 6‐311+G* basis set. The equilibrium geometries, vibrational frequencies, binding energies, Mulliken, and natural orbital population analysis charges, natural orbital electronic configuration, electron affinity, and ionization potential are obtained. Mulliken as well as natural orbital population analysis charges indicate that for all dimers, in cations most of the positive charge localized on the transition metal atom where in anions most of the negative charge localized on nitrogen atom. The binding energies for 3d‐metal mononitrides are higher than those for monocarbides and monoxides. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007     

Phase structures of a hydrated anionic phospholipid composition containing cationic dendrimers and pegylated lipids

The effect of 4th generation poly(amidoamine) dendrimer (4G PAMAM) present in an anionic phospholipid composition, consisting of hydrogenated soyphosphatidylcholine (HSPC), cholesterol (CH), dicetyl phosphate (DCP), and poly(ethylene glycol) (Mw approximately 2000) derivatized phosphatidylethanolamine (PEG2000-PE), on the hydration and liquid crystalline structure formation was investigated. The optical and polarized light microscopies of the liposomal dispersion obtained from the hydrated lipid composition show two types of birefringent structures (mesophases): plastic, wormlike microstructures and conventional, over-elongated lamellae. Differential scanning calorimetry (DSC) shows an increase in the liquid crystalline phase transition (Tg) of the lipid composition from 60 to 94 degrees C with increasing 4G PAMAM concentrations from 0 to 0.011 mM, respectively. The Tg values of the two microstructures were 68 and 84 degrees C, respectively, indicating that the plastic microstructures were 4G PAMAM/DCP-complexes-rich (alpha mesophases) and the conventional and elongated lamellae were dendrimer-doped HSPC/CH-rich microstructures (beta mesophases). Optical microscopy shows that the alpha mesophases convert into various other types of vesicular structures such as giant unilamellar vesicles and biliquid foams, upon heating above the phase transition temperature of the lipid composition (approximately 60-65 degrees C). The microstructure transformation is a result of an osmotic influx of water and the detergent action of PEG2000-PE present in the lipid composition. The transmission electron microscopy (TEM) images of the liposomal dispersion show particles embedding circular transparent domains that exactly correlate to the theoretical 4G PAMAM/DCP complex sizes, thus, providing evidence of 4G PAMAM interspersed within the two mesophases. Small-angle X-ray scattering (SAXS) measurements indicate that the alpha mesophases are a dendrimer-interlinked, symmetrically undulated lamellar phase and the beta mesophases are dendrimer-doped, occasionally kinked lamellae. An increase in dendrimer concentration in the lipid composition was found to decrease interlamellar spacing. On the basis of optical microscopy, DSC, TEM, and SAXS data, a model of dendrimer-doped mesophase structure and lamellae fusion is proposed. This investigation provides new self-assembled materials for drug/gene delivery and supplements the understanding of mechanisms involved in various biological processes such as membrane fusion, transmembrane permeation, and endocytosis.     

Determination of chlorpyrifos 20% EC (Dursban 20 EC) in scented rose and its products

The method for determination of chlorpyrifos is validated and dissipation behaviour of residue in scented rose and percent transfer in different products is described. GC-electron-capture detection with a HP-1, 30 m x 0.53 mm, 3.0 microm capillary column and nitrogen at 1 ml/min was used in the study. Plant matrices studied were: leaves, flowers, soil, rose water, absolute and concrete. Detector response linearity and sensitivity, limit of detection and determination, percent recovery were determined based on area response (mm2) of the standard. Analytical field and laboratory samples (rose water by hydro-distillation of the flowers, concrete and absolute by hexane extraction and condensation) were analysed for evaluation of the method. Samples were extracted with acetone, partitioned with water, saturated sodium chloride solution and dichloromethane. The organic layer was rotary-evaporated to 2 ml for cleanup with silica-carbon column. The column was eluted with dichloromethane-toluene-acetone (10:2:2, v/v/v) and the derived solution was rotary-evaporated to 5 ml for end analysis. Matrix enhancement effect was observed for leaf and soil samples for which corrective approach was followed to compensate for overestimation of the residue. Limit of detection for chlorpyrifos standard was 0.05 mg/l with good linearity of detector response (R2 = 0.99). Percent recovery ranged from 78 to 117% in different plant matrices (fortification level 1, 4 and 8 mg/l). Dissipation behaviour showed that chlorpyrifos was below detection limit by the 12th day of application on the scented rose with half life of 3.40 days on leaves and 3.10 days on flowers at 0.1% dosage. Percent transfer studies showed that 5.71, 46.91 and 38.80% of the residue from flowers was transferred to rose water, concrete and absolute, respectively.     

Temperature Dependent Dielectric Relaxation in Solvent Mixtures at Microwave Frequencies

By the use of time domain reflectometry method, dielectric measurements were carried out on dimethylformamide‐2‐nitrotoluene solvent mixtures in the frequency range 10 MHz‐20 GHz, at various temperatures from 15 °C to 45 °C. These solvent mixtures as well as pure solvents display a Debye type dispersion. Their frequency dependent dielectric properties can be summarized by the three parameters in the Debye equation: a static permittivity, permittivity at high frequency and a dielectric relaxation time constant. The free energy of activation for dipolar relaxation process and the Kirkwood correlation factor were determined using these fitting parameters for these solvent mixtures at various concentrations and temperatures. By using these dielectric parameters, the excess permittivity and excess inverse relaxation time is obtained. The excess permittivity is found to be positive for all concentrations and temperatures whereas the excess inverse relaxation time is negative.     

A Sensitive HPTLC Method for Estimation of Amentoflavone,a Bioactive Principle from Biophytum sensitivum (Linn.) DC. and Putranjiva roxburghii Wall.

JPC – Journal of Planar Chromatography – Modern TLC - A sensitive high-performance thin-layer chromatographic (HPTLC) method has been developed for estimation of amentoflavone, an...     

Antibody-recruiting protein-catalyzed capture agents to combat antibiotic-resistant bacteria

Antibiotic resistant infections are projected to cause over 10 million deaths by 2050, yet the development of new antibiotics has slowed. This points to an urgent need for methodologies for the rapid development of antibiotics against emerging drug resistant pathogens. We report on a generalizable combined computational and synthetic approach, called antibody-recruiting protein-catalyzed capture agents (AR-PCCs), to address this challenge. We applied the combinatorial protein catalyzed capture agent (PCC) technology to identify macrocyclic peptide ligands against highly conserved surface protein epitopes of carbapenem-resistant Klebsiella pneumoniae, an opportunistic Gram-negative pathogen with drug resistant strains. Multi-omic data combined with bioinformatic analyses identified epitopes of the highly expressed MrkA surface protein of K. pneumoniae for targeting in PCC screens. The top-performing ligand exhibited high-affinity (EC₅₀ ∼50 nM) to full-length MrkA, and selectively bound to MrkA-expressing K. pneumoniae, but not to other pathogenic bacterial species. AR-PCCs that bear a hapten moiety promoted antibody recruitment to K. pneumoniae, leading to enhanced phagocytosis and phagocytic killing by macrophages. The rapid development of this highly targeted antibiotic implies that the integrated computational and synthetic toolkit described here can be used for the accelerated production of antibiotics against drug resistant bacteria.

Antibody-recruiting protein-catalyzed capture agent (AR-PCCs) are a new class of all-synthetic and highly targeted antibiotics that recruit endogenous immune responses to eliminate drug-resistant microbes.