Isostructural dinuclear phenoxo-/acetato-bridged manganese(II), cobalt(II), and zinc(II) complexes with labile sites: kinetics of transesterification of 2-hydroxypropyl-p-nitrophenylphosphate

Using the dinucleating phenol-based ligand 2,6-bis[3-(pyridin-2-yl)pyrazol-1-ylmethyl]-4-methylphenol] (HL(2)), in its deprotonated form, the six new dinuclear complexes [M(II)(2)(L(2))(μ-O(2)CMe)(2)(MeCN)(2)][PF(6)] (M = Mn (2a), Co (3a), Zn (4a)) and [M(II)(2)(L(2))(μ-O(2)CMe)(2)(MeCN)(2)][BPh(4)] (M = Mn (2b), Co (3b), Zn (4b)) have been synthesized. Crystallographic analyses on 2b·2MeCN, 3b·2MeCN, and 4b·2MeCN reveal that these complexes have closely similar μ-phenoxo bis(μ-carboxylato) structures. The physicochemical properties (absorption and ESI-MS spectral data, 2a,b, 3a,b, and 4a,b; (1)H NMR, 4a,b) of the cations of 2a-4a are identical with those of 2b-4b. Each metal ion is terminally coordinated by a pyrazole nitrogen and a pyridyl nitrogen from a 3-(pyridin-2-yl)pyrazole unit and a solvent molecule (MeCN). Thus, each metal center assumes distorted-octahedral M(II)N(3)O(3) coordination. Temperature-dependent magnetic studies on Mn(II) and Co(II) dimers reveal the presence of intramolecular antiferromagnetic (J = -8.5 cm(-1)) for 2b and ferromagnetic exchange coupling (J = +2.51 cm(-1)) for 3b, on the basis of the Hamiltonian H = -JS(1)·S(2). The exchange mechanism is discussed on the basis of magneto-structural parameters (M···M distance). Spectroscopic properties of the complexes have also been investigated. The pH titration and kinetics of phosphatase (transesterification) activity on 2-hydroxypropyl-p-nirophenylphosphate (HPNP) were studied in MeOH/H(2)O (33%, v/v) with 2a-4a, due to solubility reasons. This comparative kinetic study revealed the effect of the metal ion on the rate of hydrolysis of HPNP, which has been compared with what we recently reported for [Ni(II)(2)(L(2))(μ-O(2)CMe)(2)(MeOH)(H(2)O)][ClO(4)] (1a). The efficacy in the order of conversion of substrate to product (p-nitrophenolate ion) follows the order 4a > 3a > 2a > 1a, under identical experimental conditions. Notably, this trend follows the decrease of pK(a) values of M(II)-coordinated water (7.95 ± 0.04 and 8.78 ± 0.03 for 1a, 7.67 ± 0.08 and 8.69 ± 0.06 for 2a, 7.09 ± 0.05 and 8.05 ± 0.06 for 3a, and 6.20 ± 0.04 and 6.80 ± 0.03 for 4a). In this work we demonstrate that the stronger the Lewis acidity (Z(eff)/r) of the metal ion, the more acidic is the M(II)-coordinated water and the greater is the propensity of the metal ion to catalyze hydrolysis of the activated phosphate ester HPNP. Notably, the observed k(2) values (M(-1) s(-1)) for Mn(II) (2a, 0.152), Co(II) (3a, 0.208), and Zn(II) (4a, 0.230) complexes (1a, 0.058; already reported) linearly correlate with Z(eff)/r values of the metal ion. In each case a pseudo-first-order kinetic treatment has been done. Kinetic data analysis of complexes 2a-4a were also done following Michaelis-Menten treatment (catalytic efficiency k(cat)/K(M) values 0.170 M(-1) s(-1) for 2a, 0.194 M(-1) s(-1) for 3a and 0.161 M(-1) s(-1) for 4a; for 1a the value is 0.089 M(-1) s(-1)). Temperature-dependent measurements were done to evaluate kinetic/thermodynamic parameters for the hydrolysis/transesterification of HPNP and yielded comparable activation parameters (E(a) (kJ mol(-1)): 71.00 ± 4.60 (1a; reported), 67.95 ± 5.71 (2a), 62.60 ± 4.46 (3a), 67.80 ± 3.25 (4a)) and enthalpy/entropy of activation values (ΔH(?) (kJ mol(-1)) = 68.00 ± 4.65 (1a; reported), 65.40 ± 5.72 (2a), 60.00 ± 4.47 (3a), 65.29 ± 3.26 (4a); ΔS(?) (J mol(-1) K(-1)) = -109.00 ± 13 (1a; reported), -107.30 ± 16 (2a), -122.54 ± 14 (3a), -104.67 ± 10 (4a)). The E(a) values for all the complexes are comparable, suggesting a closely similar reaction barrier, meaning thereby similar course of reaction. The ΔS(?) values are consistent with an associative process. Positive ΔH(?) values correspond to bond breaking of the activated complex as a result of nucleophilic attack at the phosphorus atom, releasing cyclic phosphate and p-nitrophenolate ion. These data have helped us to propose a common mechanistic pathway: deprotonation of a metal-bound species to form the effective nucleophile, binding of the substrate to the metal center(s), intramolecular nucleophilic attack on the electrophilic phosphorus atom with the release of the leaving group, and possibly regeneration of the catalyst.     

Proper forcing axiom and selective separability

We continue the study of Selectively Separable (SS) and, a game-theoretic strengthening, strategically selectively separable spaces (SS⁺) (see Barman, Dow (2011) [1]). The motivation for studying SS⁺ is that it is a property possessed by all separable subsets of Cp(X) for each σ-compact space X. We prove that the winning strategy for countable SS⁺ spaces can be chosen to be Markov. We introduce the notion of being compactlike for a collection of open sets in a topological space and with the help of this notion we prove that there are two countable SS⁺ spaces such that the union fails to be SS⁺, which contrasts the known result about SS spaces. We also prove that the product of two countable SS⁺ spaces is again countable SS⁺. One of the main results in this paper is that the proper forcing axiom, PFA, implies that the product of two countable Fréchet spaces is SS, a statement that was shown in Barman, Dow (2011) [1] to consistently fail. An auxiliary result is that it is consistent with the negation of CH that all separable Fréchet spaces have π-weight at most ω₁.     

1‐Benzoyl‐3‐[(2‐benzylsulfanyl)phenyl]thiourea

In the title compound, C₂₁H₁₈N₂OS₂, a strong intramolecular N—H...O hydrogen bond [N...O = 2.642 (3) Å] between the amide N atom and the benzoyl O atom forms an almost planar six‐membered ring in the central part of the molecule. In the crystal, molecules are packed through weak N—H...S interactions. Intra‐ and intermolecular hydrogen bonds and van der Waals interactions are the stabilizing forces for the crystal structure.     

Nitryl chloride (ClNO2): UV/vis absorption spectrum between 210 and 296 K and O(3P) quantum yield at 193 and 248 nm

Recent studies have shown that the UV/vis photolysis of nitryl chloride (ClNO2) can be a major source of reactive chlorine in the troposphere. The present work reports measurements of the ClNO2 absorption spectrum and its temperature dependence between 210 and 296 K over the wavelength range 200–475 nm using diode array spectroscopy. The room temperature spectrum obtained in this work was found to be in good agreement with the results from Ganske et al. (J. Geophys. Res. 1992, 97, 7651) over the wavelength range common to both studies (200–370 nm) but differs systematically from the currently recommended spectrum for use in atmospheric models. The present results lead to a decrease in the calculated atmospheric ClNO2 photolysis rate by 30%. Including the temperature dependence of the ClNO2 spectrum decreases the calculated atmospheric photolysis rate at lower temperatures (higher altitudes) even further. A parametrization of the wavelength and temperature dependence of the ClNO2 spectrum is presented. O(3P) quantum yields, Φ(ClNO2)(O), in the photolysis of ClNO2 at 193 and 248 nm were measured at 296 K using pulsed laser photolysis combined with atomic resonance fluorescence detection of O(3P) atoms. Φ(ClNO2)(O)(λ) was found to be 0.67 ± 0.12 and 0.15 ± 0.03 (2σ error limits, including estimated systematic errors) at 193 and 248 nm, respectively, indicating that multiple dissociation channels are active in the photolysis of ClNO2 at these wavelengths. The Φ(ClNO2)(O)(λ) values obtained in this work are discussed in light of previous ClNO2 photodissociation studies and the differences are discussed.     

Synthesis and structure of novel conformationally constrained 1',2'-azetidine-fused bicyclic pyrimidine nucleosides: their incorporation into oligo-DNAs and thermal stability of the heteroduplexes

[structures: see text] The synthesis of novel 1',2'-aminomethylene bridged (6-aza-2-oxabicyclo[3.2.0]heptane) "azetidine" pyrimidine nucleosides and their transformations to the corresponding phosphoramidite building blocks (20, 39, and 42) for automated solid-phase oligonucleotide synthesis is reported. The novel bicyclonucleoside "azetidine" monomers were synthesized by two different strategies starting from the known sugar intermediate 6-O-benzyl-1,2:3,4-bis-O-isopropylidene-D-psicofuranose. Conformational analysis performed by molecular modeling (ab initio and MD simulations) and NMR showed that the azetidine-fused furanose sugar is locked in a North-East conformation with pseudorotational phase angle (P) in the range of 44.5-53.8 degrees and sugar puckering amplitude (phi(m)) of 29.3-32.6 degrees for the azetidine-modified T, U, C, and 5-Me-C nucleosides. Thermal denaturation studies of azetidine-modified oligo-DNA/RNA heteroduplexes show that the azetidine-fused nucleosides display improved binding affinities when compared to that of previously synthesized North-East sugar constrained oxetane fused analogues.     

Conformationally constrained 2'-N,4'-C-ethylene-bridged thymidine (aza-ENA-T): synthesis, structure, physical, and biochemical studies of aza-ENA-T-modified oligonucleotides

The 2'-deoxy-2'-N,4'-C-ethylene-bridged thymidine (aza-ENA-T) has been synthesized using a key cyclization step involving 2'-ara-trifluoromethylsufonyl-4'-cyanomethylene 11 to give a pair of 3',5'-bis-OBn-protected diastereomerically pure aza-ENA-Ts (12a and 12b) with the fused piperidino skeleton in the chair conformation, whereas the pentofuranosyl moiety is locked in the North-type conformation (7 degrees < P < 27 degrees, 44 degrees < phi m < 52 degrees). The origin of the chirality of two diastereomerically pure aza-ENA-Ts was found to be due to the endocyclic chiral 2'-nitrogen, which has axial N-H in 12b and equatorial N-H in 12a. The latter is thermodynamically preferred, while the former is kinetically preferred with Ea = 25.4 kcal mol-1, which is thus far the highest observed inversion barrier at pyramidal N-H in the bicyclic amines. The 5'-O-DMTr-aza-ENA-T-3'-phosphoramidite was employed for solid-phase synthesis to give four different singly modified 15-mer antisense oligonucleotides (AONs). Their AON/RNA duplexes showed a Tm increase of 2.5-4 degrees C per modification, depending upon the modification site in the AON. The relative rates of the RNase H1 cleavage of the aza-ENA-T-modified AON/RNA heteroduplexes were very comparable to that of the native counterpart, but the RNA cleavage sites of the modified AON/RNA were found to be very different. The aza-ENA-T modifications also made the AONs very resistant to 3' degradation (stable over 48 h) in the blood serum compared to the unmodified AON (fully degraded in 4 h). Thus, the aza-ENA-T modification in the AON fulfilled three important antisense criteria, compared to the native: (i) improved RNA target affinity, (ii) comparable RNase H cleavage rate, and (iii) higher blood serum stability.     

Optical sectioning using single‐plane‐illumination Raman imaging

Confocal Raman imaging is widely used for optical sectioning of materials. However, for biological applications it often suffers from poor axial resolution, photodamage to the sample of interest, substrate interference, and long acquisition times. We have applied the principles of light sheet microscopy to Raman imaging and show for the first time that optically sectioned Raman images can be obtained in significantly lower acquisition times. Copyright © 2010 John Wiley & Sons, Ltd.     

Hexacoordinate Nickel(II)/(III) Complexes that Mimic the Catalytic Cycle of Nickel Superoxide Dismutase

A functional model complex of nickel superoxide dismutase (NiSOD) with a non‐peptide ligand which mimics the full catalytic cycle of NiSOD is unknown. Similarly, it has not been fully elucidated whether NiSOD activity is a result of an outer‐ or inner‐sphere electron‐transfer mechanism. With this in mind, two octahedral nickel(II)/(III) complexes of a bis‐tridentate N₂S donor carboxamide ligand, N‐2‐phenylthiophenyl‐2′‐pyridinecarboxamide (HL^Ph), have been synthesized, structurally characterized, and their SOD activities examined. These complexes mimic the full catalytic cycle of NiSOD. Electrochemical experiments support an outer‐sphere electron‐transfer mechanism for their SOD activity.     

Shedding Light on the Extinction‐Enhancement Duality in Gold Nanostar‐Enhanced Raman Spectroscopy

Surface‐enhanced Raman spectroscopy (SERS) has evolved from an esoteric physical phenomenon to a robust and effective analytical method recently. The need of addressing both the field enhancement and the extinction of nanoparticle suspensions, however, has been underappreciated despite its substantive impact on the sensing performance. A systematic experimental investigation of SERS enhancement and attenuation is performed in suspensions of gold nanostars, which exhibit a markedly different behavior in relation to conventional nanoparticles. The relationship is elucidated between the SERS enhancement and the localized surface plasmon resonance band, and the effect of the concentration of the gold nanostars on the signal propagation is investigated. It is shown that an optimal concentration of gold nanostars exists to maximize the enhancement factor (EF), and the maximum EF occurs when the LSPR band is blue‐shifted from the excitation wavelength rather than at the on‐resonance position.