Binding of an inhibitor of the p53/MDM2 interaction to MDM2

The mode of action of the secondary metabolite chlorofusin, which antagonises the interaction between p53 and MDM2, involves direct binding to the N-terminal domain of MDM2.     

Interaction of atrazine with Laurentian fulvic acid: binding and hydrolysis

Ultrafiltration fractionation and liquid chromatography (LC) have been applied to the study of the binding and hydrolysis of the polar herbicide atrazine on a stoichiometrically well characterized fulvic acid. Binding requires extensive carboxylate site protonation but the binding sites represent a very small fraction of total carboxylate. The data show that binding of atrazine is not competitive with binding of the hydrolytic product hydroxyatrazine. However, smaller molecular weight fractions of the fulvic acid mixture compete with atrazine for sites on the larger molecular weight fraction. Binding equilibrium is not rapid. A model of binding involving hydrogen bonding and/or charge-transfer complexing to specific sites created dynamically by the conformational equilibria of the higher molecular weight polymeric fulvic acid fractions is proposed as the best accommodation of the variety of observed facts.     

The role of acidic residues and of sodium ion adduction on the gas-phase H/D exchange of peptides and peptide dimers

Gas-phase H/D exchange is widely used for characterizing the structure of ions. However, many structural parameters that affect the rate of H/D exchange are poorly understood, which complicates the interpretation of experimental data. Here, the effects of sodium ion adduction on the rate of H/D exchange with D₂O for a series of peptides and peptide dimers with varying numbers of acidic residues are described. The maximum number of sodium ion adducts that can be accommodated by the peptides and peptide dimers in this study is N + 1, where N is the number of free carboxylic acid groups. The formation of methyl-esters at all carboxylic acid groups, or the replacement of all the acidic hydrogens with sodium ions, effectively shuts down H/D exchange with D₂O. In contrast, both the rate and the extent of H/D exchange with D₂O are increased for most of the peptides and peptide dimers by the adduction of an intermediate number of sodium ions. These results are consistent with the H/D exchange occurring via a salt-bridge mechanism and show that the presence of two carboxylic acid groups is much better than one. The results with peptide dimers also indicate that surface accessibility may not be a dominant factor in the extent of H/D exchange for these ions.