Efficient Chemical Protein Synthesis using Fmoc-Masked N-Terminal Cysteine in Peptide Thioester Segments

We report an operationally simple method to facilitate chemical protein synthesis by fully convergent and one-pot native chemical ligations utilizing the fluorenylmethyloxycarbonyl (Fmoc) moiety as an N-masking group of the N-terminal cysteine of the middle peptide thioester segment(s). The Fmoc group is stable to the harsh oxidative conditions frequently used to generate peptide thioesters from peptide hydrazide or o-aminoanilide. The ready availability of Fmoc-Cys(Trt)-OH, which is routinely used in Fmoc solid-phase peptide synthesis, where the Fmoc group is pre-installed on cysteine residue, minimizes additional steps required for the temporary protection of the N-terminal cysteinyl peptides. The Fmoc group is readily removed after ligation by short exposure (<7 min) to 20 % piperidine at pH 11 in aqueous conditions at room temperature. Subsequent native chemical ligation reactions can be performed in presence of piperidine in the same solution at pH 7.     

Ionization and solvation of HCl adsorbed on the D2O-ice surface

The interaction of HCl with the D(2)O-ice surface has been investigated in the temperature range 15-200 K by utilizing time-of-flight secondary ion mass spectroscopy, temperature-programmed desorption, and x-ray photoelectron spectroscopy. The intensities of sputtered H(+)(D(2)O) and Cl(-) ions (the H(+) ions) are increased (decreased) markedly above 40 K due to the hydrogen bond formation between the HCl and D(2)O molecules. The HCl molecules which form ionic hydrates undergo H/D exchange at 110-140 K and a considerable fraction of them dissolves into the bulk above 140 K. The neutral hydrates of HCl should coexist as evidenced by the desorption of HCl above 170 K. They are incorporated completely in the D(2)O layer up to 140 K. The HCl molecules embedded in the thick D(2)O layer dissolve into the bulk, and the ionic hydrate tends to segregate to the surface above 150 K.     

Surface diffusion and entrapment of simple molecules on porous silica

Interactions of simple molecules with the surface of porous silica have been investigated using time-of-flight secondary ion mass spectrometry and temperature programmed desorption. A monolayer of water diffuses into pores at temperatures higher than 110 K. Multilayers of water are also incorporated in pores via sequential surface diffusion. In contrast, a methanol monolayer tends to stay on the surface up to 150 K, and carbon dioxide diffuses into pores rather gradually. Results can be explained as the contribution of hydrogen bonds between the adsorbate–substrate and adsorbate–adsorbate interactions. The predominance of the former (latter) might be responsible for single-molecule migration of methanol and carbon-dioxide (collective diffusion of water molecules) on the surface. These molecules are entrapped at higher coordination sites in pores, as revealed from thermal desorption peaks appearing at higher temperatures than those from non-porous silica. However, no significant difference is observed in desorption kinetics of CF₂Cl₂, Kr, CH₄, and N₂ molecules between the porous and non-porous silica substrates.     

Surface and interface effects on structural transformation of vapor-deposited ethylbenzene films

We have investigated how the structures of vapor-deposited glassy films change with increasing temperature by using time-of-flight secondary ion mass spectrometry and ion scattering spectroscopy. It is found that intermixing of the topmost layer of an ethylbenzene film occur at temperature (~ 80 K) considerably lower than the glass transition temperature (T_g = 118 K) when the film is deposited at 20 K. This phenomenon can be interpreted as the occurrence of a two-dimensional liquid that diffuses into pores of the film, which is evidenced from comparison with surface diffusivity measurements using a porous silicon layer. For nonporous films deposited at higher temperatures, the molecules intermix gradually prior to the abrupt film morphology change at T_g. This phenomenon can be interpreted as decoupling between translational diffusivity and viscosity in the bulk. The film thickness has no significant effects on the evolution of supercooled liquid at T_g except for the monolayer film, whereas crystallization is quenched for the films thinner than 8 monolayers. The roles of the 2D liquid on the surface and an immobilized layer formed at the interface are discussed in finite-size effects on the glass-liquid transition and crystallization.     

Glass-liquid transition of carbon dioxide and its effect on water segregation

The interactions between CO(2) and D(2)O molecules have been investigated by using time-of-flight secondary ion mass spectrometry in the temperature rage 13-120 K. The monolayer of CO(2) tends to wet or intermix with the D(2)O film below 40 K and dewets the surface above 60 K. The water nanoclusters deposited on the CO(2) multilayers also start to segregate at 50-60 K and are finally incorporated in the bulk at 85-90 K, where the morphology of the film changes abruptly together with the desorption rate of the CO(2) molecules. The break at 85 K should be caused by the occurrence of the fluidized film whereas the glass-transition temperature of CO(2), as determined from the onset of translational molecular diffusion, is assigned to 50 K. This behavior may be related to the ultraviscous nature of the supercooled liquid, arising from the decoupling between the translational molecular diffusion and viscosity. The He(+) irradiation of the mixed CO(2)-D(2)O ice and the D(2)(+) irradiation of the CO(2) ice at 13 K do not yield any surface residues assignable to H(2)CO(3) and its precursors above 100 K. This result may be related to the segregation between the CO(2) and D(2)O molecules.     

Taylor‐Galerkin B‐spline finite element method for the one‐dimensional advection‐diffusion equation

The advection‐diffusion equation has a long history as a benchmark for numerical methods. Taylor‐Galerkin methods are used together with the type of splines known as B‐splines to construct the approximation functions over the finite elements for the solution of time‐dependent advection‐diffusion problems. If advection dominates over diffusion, the numerical solution is difficult especially if boundary layers are to be resolved. Known test problems have been studied to demonstrate the accuracy of the method. Numerical results show the behavior of the method with emphasis on treatment of boundary conditions. Taylor‐Galerkin methods have been constructed by using both linear and quadratic B‐spline shape functions. Results shown by the method are found to be in good agreement with the exact solution. © 2009 Wiley Periodicals, Inc. Numer Methods Partial Differential Eq 2010     

LTNE thermoconvective instability in Newtonian rotating layer under magnetic field utilizing nanoparticles

Journal of Thermal Analysis and Calorimetry - In the present framework, the simultaneous effect of rotation, magnetic field, heat source and local thermal non-equilibrium (LTNE) is investigated on...     

Dielectric and electro-optical studies of a nickel-ferrite-nanoparticle- doped ferroelectric liquid crystal mixture

Effect of magnetic nanoparticles (nickel ferrite) doping on the dielectric and electro-optical properties of a ferroelectric liquid crystal mixture has been studied. In a doped ferroelectric liquid crystal mixture, dispersion of a small amount (0.25 wt.%) of nickel ferrite nanoparticles decreases the polarization and improves the response time compared to an undoped mixture. The significant changes in the polarization and response time are explained on the basis of dipole–dipole interaction and anchoring phenomena. Dielectric permittivity also increases with increasing the temperature of the SmC* phase and shows a reduction in dielectric loss in a doped sample. A Goldstone mode is clearly observed at ～200 and ～500 Hz in an undoped and a doped sample, respectively.     

Hydration of NaCl on glassy, supercooled-liquid, and crystalline water

Interactions of sodium chloride with amorphous and crystalline water films, leading to the possible formation of a dilute NaCl solution, were investigated using time-of-flight secondary ion mass spectrometry as a function of temperature. A monolayer of NaCl tends to remain on the surface or in subsurface sites of thick amorphous solid water films (200 monolayers); the Na+ ion is hydrated preferentially, whereas the Cl- ion is segregated at the surface. The hydration structure of NaCl is fundamentally unchanged for viscous liquid water that appears at temperatures higher than 136 K. The solubility of NaCl increases abruptly at 160 K because of the evolution of supercooled liquid water, which can hydrate the Cl- ion efficiently. However, the diffusion of the ions toward the bulk of supercooled liquid water is interrupted by crystallization; therefore, the dilute NaCl solution that is characterized by completely separated Na+-Cl- pairs may not be formed. When NaCl is deposited on the crystalline ice film, hydration of NaCl is enhanced above 160 K as well, indicating that a liquidlike phase coexists with crystals.