Protease sensors for bioimaging

Optical imaging of specific molecular targets and pathways in vivo has recently become possible through continued developments in imaging equipment, reconstruction algorithms, and more importantly the availability of imaging reporter molecules. These reporter molecules encompass photoproteins expressed in vivo and exogenously administered probes detectable by fluorescence and/or bioluminescence imaging. One particularly enticing aspect of optical imaging is the ability to design activatible probes with inherent amplification. This review summarizes our experience in developing novel near-infrared fluorescent (NIRF) imaging agents that report on protease activities. These agents are designed to be biocompatible, highly activatible, and able to produce bright NIRF following protease cleavage.     

Beta-1,3-glucan polysaccharides as novel one-dimensional hosts for DNA/RNA, conjugated polymers and nanoparticles

Beta-1,3-glucan polysaccharides have triple-stranded helical structures whose sense and pitch are comparable to those of polynucleotides. We recently revealed that the beta-1,3-glucans could interact with certain polynucleotides to form triple-stranded and helical macromolecular complexes consisting of two polysaccharide-strands and one polynucleotide-strand. This unique property of the beta-1,3-glucans has made it possible to utilize these polysaccharides as potential carriers for various functional polynucleotides. In particular, cell-uptake efficiency of the resultant polysaccharide/polynucleotide complexes was remarkably enhanced when functional groups recognized in a biological system were introduced as pendent groups. The beta-1,3-glucans can also interact with various one-dimensional architectures, such as single-walled carbon nanotubes, to produce unique nanocomposites, in which the single-walled carbon nanotubes are entrapped within the helical superstructure of beta-1,3-glucans. Various conductive polymers and gold nanoparticles are also entrapped within the helical superstructure in a similar manner. In addition, diacetylene monomers entrapped within the helical superstructure can be photo-polymerized to afford the corresponding poly(diacetylene)-nanofibers with a uniform diameter. These findings indicate that the beta-1,3-glucans are very attractive and useful materials not only in biotechnology but also in nanotechnology. These unique properties of the beta-1,3-glucans undoubtedly originate from their inherent, very strong helix-forming character which has never been observed for other polysaccharides.     

Chemistry for the design and better understanding of cement-based materials and composites

Macrodefect-free (MDF) materials are one example of “hot topics” in the field of cement-based materials and composites exerting new possibilities of the exploitation of added value. These are formed through cross-linking reactions of atoms at the interfaces of cement grains and functional polymers, when medium pressure and twin-rolling procedure are applied. The MDF-relevance of the system of Portland cement + polyphosphate is reported, together with optimal synthesis conditions and limiting rules. The chemistry knowledge about MDF materials has been shown critical for both procedure design and exploitation. Chemical shifts in both ²⁷Al and ³¹P MAS NMR spectra confirm Al(6)—O—P(4) cross-linking in virgin probes and indicate secondary hydrolysis during moisture uptake in domains free of cross-links. Thermogravimetric identification of the contents of hydrated and cross-linked phases in virgin and in moisture-attacked MDF probes displays that moisture uptake is accompanied by an increase in content of cementitious hydrates and CaCO₃. The key phenomena governing the moisture sensitivity/resistance are the density and compactness of interfacial Al(6)—O—P(4) cross-links vs. the access of the moist environment to the unreacted cement residue. The paper was presented at the 20 ICCBiC (International Conference on Coordination and Bioinorganic Chemistry) held on 5–10 June 2005 in Smolenice, Slovakia.     

Cyclization of Nitrospirobenzopyrans to Bridged Benzoxazepino[3,2-a]indoles

Condensation of 1-substituted 1,2,3,9a-tetrahydro-9H-imidazo[1,2-a]indol-2-ones with 5-nitrosalicylaldehyde afforded 1′-[(N-monosubstituted carbamoyl)methyl]indoline nitrospirobenzopyrans. Treatment of the latter with strong base led to the formation of a mixture of cis/trans-5a,13-methano-1,3-benzoxazepino[3,2-a]indoles. Results of semiempirical calculations gave evidence that such a transformation of nitrospirobenzopyrans to bicyclic indole derivatives could proceed via a single transition state, where the negatively charged carbon atom attacks the vinylic double bond of the spiropyran system.     

A test for monitoring traces of cholinesterase inhibitors in surface waters

Summary The inhibitory effect on cholinesterase activity is the only common attribute of organophosphorus pesticides and carbamates. Therefore a screening test based on cholinesterase assay is suitable for detection of total pesticides in the pollution control of surface waters. The reaction-rate cholinesterase assay in which acetylthiocholine iodide is used as substrate and 5,5-dithio-bis (2-nitrobenzoic acid) (Ellman's reagent) as indicator, with spectrophotometric monitoring at 412 nm for 2 min is applied. The detection limits for various pesticides in aqueous solutions have been determined. The results are comparable to those of gas Chromatographic analyses and for carbamates are even better. The sensitivity can be improved by two orders of magnitude by preconcentration on Amberlite XAD-4 column. The collection efficiency of about 80% for all the pesticides tested has been confirmed by gas chromatography. A rapid and simple field test is based on the same assay system. The reaction is stopped by complete inhibition of the enzyme and the colour is compared visually with that of standards prepared by dilution of the initial enzyme solution, and the comparison is facilitated by use of a red filter (_max 555 nm). A relative standard deviation of 5.5% was obtained for 3 series of sample covering the range 0–100% inhibition, 9 experiments done by 6 persons.

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Nachweis von Spuren Cholinesterase hemmender Faktoren in Oberflächenwässern

Zusammenfassung Der hemmende Effekt gegenüber Cholinesterase ist das einzige gemeinsame Kennzeichen phosphor-organischer Pestizide und Carbamate. Der Nachweis mit Cholinesterase eignet sich daher für den Nachweis von Pestiziden bei der Reinheitskontrolle von Oberflächengewässern. Der Nachweis mit Acetylthiocholinjodid als Substrat und 5,5-Dithio-bis(2-nitrobenzoe-säure) (Ellmans Reagens) als Indikator durch spektrophotometrische Bestimmung bei 412 nm wurde angewendet. Die Erfassungsgrenzen für verschiedene Pestizide in wäßriger Lösung wurden bestimmt. Die Ergebnisse sind mit denen gaschromatographischer Analysen vergleichbar, für Carbamate sogar besser. Die Empfindlichkeit kann durch Anreicherung mit Amberlit XAD-4 um zwei Größenordnungen verbessert werden. Die Anreicherung um ungefähr 80% wurde gaschromatographisch für alle untersuchten Pestizide bestätigt. Ein schneller und einfacher Feldversuch beruht auf demselben Reaktionsvorgang. Die Reaktion wird durch vollständige Hemmung des Enzyms abgebrochen und die Farbe visuell verglichen mit verdünnten Standardlösungen der ursprünglichen Enzymlösung. Dieser Vergleich wird durch ein Rotfilter (_max 555 nm) erleichtert. Eine relative Standardabweichung von 5,5% wurde für 3 Probenreihen mit einem Hemmungseffekt von 0–100% erhalten, wobei 6 Personen 9 Versuche durchführten.

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Presented at the 8th International Microchemical Symposium, Graz, August 25–30, 1980.     

Beiträge zur Grenzflächenchemie phosphororganischer Verbindungen

Zusammenfassung Die tertiären n-aliphatischen Phosphine spreiten auf Wasser spontan zu einem monomolekularen Film aus. Die Kompressionsisothermen der untersuchten tertiären aliphatischen Phosphine in homologer Reihe mit der Kettenlänge von C₄ bis C₁₆ wurden ausgemessen und die dabei auftretenden Filmzustände identifiziert. Das tertiäre C₅-Phosphin bildet realgasanaloge, die C₆–C₁₂-Phosphine flüssiganaloge und die längerkettigen Phosphine festanaloge Filme.Ein Übergang vom tertiären Phosphin zum Phosphinoxid hat auf die Filmbildung keinen Einfluß, es ergibt sich nur eine geringfügige Vergrößerung der molekularen Fläche von etwa 10%.Der auf den Filmdruck 0 extrapolierte molekulare Flächenbedarf wurde sowohl nach den herkömmlichen Verfahren aus denF/A-Diagrammen als auch mit einer anderen Methode aus denF·A/F-Isothermen berechnet: beide Werte zeigen sehr gute Übereinstimmung. Dabei zeigt der Vergleich mit dem aus den molekularen Abmessungen errechneten Flächenbedarf, daß die Phosphinmoleküle im komprimierten Film nicht vollständig in Pyramiden- bzw. Kegelform geordnet sind sondern daß die aliphatischen Ketten vom sechsten C-Atom an senkrecht auf der Substratoberfläche stehen. Der P-C-Winkel ist nicht für, die ganze Kette richtungsweisend, die flexiblen Kohlenwasserstoff ketten sind abgewinkelt. Mit zunehmender Kettenlänge wächst das Molekül nur noch senkecht in die Höhe, deshalb bleibt die molekulare Fläche ab C₆ annähernd konstant.

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Summary Tertiäry n-aliphatic phosphines form on water surfaces spontanously monolayers. The force-area isotherms of a homologous series of phosphins with a chainlength varying from C₄ to C₁₆ were measured and the appearing states of the films were identified. The tertiary C₅ phosphine forms real-gas analogous films, the C₆ to C₁₂ phosphines liquid, analogous films and phosphines with lange carbon chains solid analogous films.A transition from tertiäry phosphines to the corresponding phosphine oxide has no influence on the formation of the films, it results only in an insignificant (10 p. c.) increase of the molecular area.The molecular area from the extrapolation to the film pressure of 0 was calculated by the customery methods out of theF/A diagramms, and by an other methods out of theFA/F isotherms. Good accordance of both values is shown. The area calculated from the molecular dimensions shows in comparison, that the phosphine molecules in comprimated films are not exactly disposed in pyramidal or conic shape, but that each aliphatic chain changes its direction after the sixth C-atom and stands vertically to the liquid-air interface. The direction of the chains is not determined by the angle of the P–C bonding, because the flexible carbon changes are distorted. With increasing chainlength, beginning from the tertiäry C₆ phosphin the carbon chains stand only vertically to the substrate. Therefore the need of molecular area remains almost constant.

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Mit 8 Abbildungen und 5 Tabellen     

Design and characterization of flow-through coulometric cells with porous working electrodes made of crushed vitreous carbon

Summary Three types of flow-through, three-electrode cells with porous working electrodes made of crushed vitreous carbon were tested. The electrochemical properties of the cells were studied by hydrodynamic and cyclic voltammetry using potassium ferrocyanide test solutions. Depending on the volume of the porous working electrode, Nernstian behaviour and electrochemical yields up to 100% were observed for flow rates 1 to 7 ml/min. In the stopped-flow regime the cells exhibit thin-layer cell properties. The utility of the cells is demonstrated for on-line coulometric detection, continuous removal of impurities and dissolved oxygen and for anodic stripping coulometry of trace copper.On leave from: Department of Analytical Chemistry, Slovak Technical University, CS-812 37 Bratislava, Czechoslovakia     

Production of poly(methyl methacrylate) particles by dispersion polymerization with mercaptopropyl terminated poly(dimethylsiloxane) stabilizer in supercritical carbon dioxide

Poly(methyl methacrylate) (PMMA) particles were produced by dispersion polymerization of methyl methacrylate in the presence of mercaptopropyl terminated poly(dimethylsiloxane) (MP-PDMS) in supercritical carbon dioxide at about 30 MPa for 24 h at 65 °C. The particle diameter could be controlled in a size range of submicron to micron by varying MP-PDMS concentration. The MP-PDMS worked as not only a chain transfer agent but also a colloidal stabilizer, which was named tran stab.Part CCLI of the series Studies on suspension and emulsion     

Molecular Rectangle Formed by Head-to-tail Self-Assembly of 1-(Dipyrrin-2-yl)-1-(dipyrrin-3-yl)methane

Summary. 1-(Dipyrrin-2-yl)-1-(dipyrrin-3-yl)methane, the N-confused analog of biladiene-ac, is prepared by condensation of 2,3-dipyrromethane with two molecules of 2-formylpyrrole in dichloromethane in the presence of hydrogen bromide. Self-assembly of the ligand with Zn(II) in dichloromethane and methanol offers a dinuclear dimeric complex with a ligand:metal ratio of 2:2. X-Ray crystal structure analysis reveals two ligands bound through a head-to-tail pattern to two zinc centers to form a severely distorted helical conformation, which has the shape of a rectangle.     

Human topoisomerase I poisoning: docking protoberberines into a structure-based binding site model

Summary Using the X-ray crystal structure of the human topoisomerase I (top1) – DNA cleavable complex and the Sybyl software package, we have developed a general model for the ternary cleavable complex formed with four protoberberine alkaloids differing in the substitution on the terminal phenyl rings and covering a broad range of the top1-poisoning activities. This model has the drug intercalated with its planar chromophore between the −1 and +1 base pairs flanking the cleavage site, with the nonplanar portion pointing into the minor groove. The ternary complexes were geometry-optimized and relative interaction energies, computed by using the Tripos force field, were found to rank in correct order the biological potency of the compounds; in addition, the model is also consistent with the top1-poisoning inactivity of berberine, a major prototype of the protoberberine alkaloids. The model might serve as a rational basis for elaboration of the most active compound as a lead structure, in order to develop more potent top1 poisons as next generation anti-cancer drugs.